Transcript 24510 | MetamORF

Transcript

ID CARD

MetamORF ID

24510

ENSMUST00000189220

Name

Agfg1-206

Strand

Biotype

protein_coding

Start-end positions

82839483-82901182

CDS Start-stop positions

82839723-82895058

CDS Relative positions

Sequences

Transcript sequence

GGG ...

Genome browsers

UCSC

Gene

NCBI:15463

Aliases

Agfg1,
AU045498, C130049H11Rik, C85612,
D730048C23Rik, ENSMUSG00000026159, Hrb,
MGI:1333754, NCBI:15463, OFF:Agfg1,
RAB, Rip

Chr 1

ORFs

35 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
784261	69	CTG ...	LVR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell
725546	102	ATG ...	MFR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
685354	138	CTG ...	LQM ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
721937	96	TTG ...	LGP ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
646505	63	ATG ...	MRL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
376680	33	CTG ...	LLE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
8231	30	CTG ...	LQT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
479533	51	TTG ...	LMT ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
784980	42	CTG ...	LPA ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
136077	207	ATG ...	MLA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
777893	66	CTG ...	LWF ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
381730	123	GTG ...	VLI ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
653580	72	CTG ...	LLV ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
445966	48	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
463686	33	GTG ...	VAV ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	Spleen_B_cell
495889	30	CTG ...	LLE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Spleen_B_cell
386623	114	TTG ...	LEP ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
386103	30	CTG ...	LEC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
646991	132	ATG ...	MQI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
761206	66	GTG ...	VRR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	B_cell
468057	48	ATG ...	MTD ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, Spleen_B_cell
819852	51	TTG ...	LNS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
24509	39	GTG ...	VHL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Testis
687436	75	CTG ...	LLV ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
647984	102	GTG ...	VVL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
700690	114	GTG ...	VIK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell
705286	72	TTG ...	LVL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
724685	123	TTG ...	LQT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
321745	156	TTG ...	LLI ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
333868	165	ATG ...	MLI ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
700782	33	TTG ...	LNS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
472884	192	CTG ...	LPG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, Spleen_B_cell
560400	45	CTG ...	LVY ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
351915	120	CTG ...	LIL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
361572	147	TTG ...	LIT ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell

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