Transcript 4911 | MetamORF

Transcript

ID CARD

MetamORF ID

4911

ENSMUST00000216863

Name

Actn4-210

Strand

Biotype

protein_coding

Start-end positions

28893711-28898193

CDS Start-stop positions

28894229-

CDS Relative positions

Sequences

Transcript sequence

GTG ...

Genome browsers

UCSC

Gene

NCBI:60595

Aliases

Actn4,
C77391, ENSMUSG00000054808, MGI:1890773,
NCBI:60595, OFF:Actn4

Chr 7

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
423079	75	ATG ...	MST ...	Ribo-seq	ATG		6	sORFs_org_Mouse	sORF	3T3, E14, MEF, Neutrophil, v6-5
591788	114	TTG ...	LPA ...	Ribo-seq	TTG		5	sORFs_org_Mouse	sORF	3T3, E14, MEF, NSC, v6-5
598541	207	GTG ...	VGK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
590557	33	GTG ...	VWL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	3T3, NSC
596541	87	TTG ...	LTS ...	Ribo-seq	TTG		8	sORFs_org_Mouse	sORF	3T3, B_cell, E14, MEF, Neutrophil, NSC, v6-5
600120	189	ATG ...	MRW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	3T3, v6-5
590720	42	CTG ...	LGA ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	sORF	3T3
531007	111	ATG ...	MHS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	sORF	3T3, E14, MEF, Neutrophil, v6-5
601170	234	GTG ...	VWA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	3T3
596617	48	CTG ...	LIR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	sORF	3T3, E14, MEF, v6-5
595760	144	GTG ...	VWA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	sORF	3T3, E14, MEF, v6-5
599695	198	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	3T3
598986	201	CTG ...	LLP ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF	3T3, BMDC, E14, MEF, Neutrophil, NSC, v6-5
599171	204	TTG ...	LPA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	3T3, v6-5
591762	69	ATG ...	MPR ...	Ribo-seq	ATG		4	sORFs_org_Mouse	sORF	3T3, E14, MEF, v6-5
588331	99	ATG ...	MRW ...	Ribo-seq	ATG		6	sORFs_org_Mouse	sORF	3T3, E14, MEF, Neutrophil, NSC, v6-5
4910	246	CTG ...	LRA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	sORF	3T3, BMDC, E14, MEF, Neutrophil, Skin_tumor, v6-5
601806	135	ATG ...	MHS ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	3T3, BMDC, E14, MEF, Neutrophil, v6-5
599499	99	ATG ...	MST ...	Ribo-seq	ATG		7	sORFs_org_Mouse	sORF	3T3, BMDC, E14, MEF, Neutrophil, v6-5
602000	186	TTG ...	LCC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	3T3

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