Transcript 22445 | MetamORF

Transcript

ID CARD

MetamORF ID

22445

ENSMUST00000127731

Name

Acsl6-211

Strand

Biotype

processed_transcript

Start-end positions

54335497-54361539

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:216739

Aliases

A330035H04Rik,
Acsl6, AW050338, ENSMUSG00000020333,
Facl6, LACS, Lacsl,
MGI:894291, mKIAA0837, NCBI:216739,
OFF:Acsl6

Chr 11

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
304826	78	TTG ...	LRQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
294059	36	CTG ...	LWH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
308881	69	CTG ...	LAP ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
302739	162	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
297073	30	ATG ...	MNS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
307712	81	TTG ...	LSC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
296780	123	CTG ...	LCF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
299570	57	CTG ...	LPR ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
305915	123	ATG ...	MCE ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
296285	42	GTG ...	VSL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
292817	39	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
297498	69	TTG ...	LST ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
303129	48	CTG ...	LCG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
309788	39	GTG ...	VYL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
303298	81	ATG ...	MLR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
302287	51	ATG ...	MHS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
22540	180	GTG ...	VML ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
307534	108	CTG ...	LEF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
294853	48	ATG ...	MQR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Brain
304136	90	CTG ...	LLT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
303153	72	CTG ...	LLS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
23352	192	CTG ...	LDD ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
305288	66	TTG ...	LVF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
307400	150	TTG ...	LPP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
309835	96	TTG ...	LLR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
298544	93	TTG ...	LQQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
305695	66	CTG ...	LKS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
299797	117	GTG ...	VPD ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
306272	132	CTG ...	LTA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
291522	132	TTG ...	LVG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
293258	72	CTG ...	LTL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
304814	123	TTG ...	LIG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
23989	156	CTG ...	LHS ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
305510	60	GTG ...	VGP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
292054	87	TTG ...	LAL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
23998	207	TTG ...	LKK ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
22444	174	CTG ...	LGK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Testis
302845	87	CTG ...	LTP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
294913	45	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
309577	51	CTG ...	LAH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
306266	33	GTG ...	VRT ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Brain
299554	54	CTG ...	LRE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain

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