Transcript 470074

Transcript

ID CARD

MetamORF ID

470074

ENSMUST00000155704

Name

Aco2-205

Strand

Biotype

retained_intron

Start-end positions

81907359-81910163

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

NCBI:11429

Aliases

Aco-2,
Aco2, Aco3, D10Wsu183e,
ENSMUSG00000022477, MGI:87880, NCBI:11429,
OFF:Aco2

Chr 15

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
788680	204	TTG ...	LIG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, E14
360645	42	CTG ...	LSR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14, Spleen_B_cell
1183684	144	AAG ...	KQA ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
359218	108	CTG ...	LWL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
356094	45	TTG ...	LAN ...	Ribo-seq	TTG	strong	4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Spleen_B_cell
1001782	150	GTG ...	VAK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1180528	120	AAG ...	KCK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1538144	54	TTG ...	LTL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
1180983	66	AGG ...	RDV ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
1181144	72	ATC ...	ILR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1000683	135	TTG ...	LAH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Brain
361777	156	TTG ...	LAA ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, NSC
1181699	84	ACG ...	TDS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14
357615	132	ATG ...	MRT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14
1181861	96	AGG ...	RHW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
359239	30	GTG ...	VPL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
360176	60	GTG ...	VGG ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, Spleen_B_cell

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