Transcript 680153

Transcript

ID CARD

MetamORF ID

680153

ENSMUST00000167495

Name

Acin1-225

Strand

Biotype

processed_transcript

Start-end positions

54645211-54650268

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCG ...

Genome browsers

UCSC

Gene

NCBI:56215

Aliases

2610036I19Rik,
2610510L13Rik, Acin1, Acinus,
acinusL, acinusS, Acn,
C79325, ENSMUSG00000022185, MGI:1891824,
mKIAA0670, NCBI:56215, OFF:Acin1

Chr 14

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
787134	141	CTG ...	LCP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
675826	102	CTG ...	LEF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
350093	33	ATG ...	MAT ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
467911	141	GTG ...	VDL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1306934	63	ACG ...	TPL ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
467681	54	CTG ...	LRM ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
1310054	120	AAG ...	KLE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1310148	81	AAG ...	KSL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1307111	30	ATT ...	IQE ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1308964	81	ATC ...	IFM ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
468718	270	TTG ...	LSQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
787110	153	GTG ...	VQA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
468730	234	GTG ...	VTQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, R1E
1307325	60	CTG ...	LKI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
677308	84	TTG ...	LMT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
345082	87	TTG ...	LWI ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
1308814	90	AAG ...	KKR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
468137	108	GTG ...	VTQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1179060	246	AAG ...	KLE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1309711	66	AAG ...	KGL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
348129	48	ATG ...	MRQ ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
351185	90	CTG ...	LLW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
468769	243	CTG ...	LET ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, R1E
1140403	57	CTG ...	LPR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
345213	69	ATG ...	MTP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
469227	183	CTG ...	LPR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E
1307600	33	TTG ...	LPC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
1308852	66	ATT ...	IRR ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
350625	75	ATG ...	MPM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
1140948	54	GTG ...	VEV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
468938	213	CTG ...	LAE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, NSC, R1E
1309324	159	AAG ...	KGV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14

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