Transcript 1178834

Transcript

ID CARD

MetamORF ID

1178834

ENSMUST00000138321

Name

Acin1-215

Strand

Biotype

protein_coding

Start-end positions

54643288-54644210

CDS Start-stop positions

54643670-

CDS Relative positions

Sequences

Transcript sequence

AAC ...

Genome browsers

UCSC

Gene

NCBI:56215

Aliases

2610036I19Rik,
2610510L13Rik, Acin1, Acinus,
acinusL, acinusS, Acn,
C79325, ENSMUSG00000022185, MGI:1891824,
mKIAA0670, NCBI:56215, OFF:Acin1

Chr 14

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1306489	87	AAG ...	KPR ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	E14
786574	54	ATG ...	MTS ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF	Brain, E14, R1E
1310333	174	AGG ...	RDP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	E14
1309797	51	ATG ...	MGR ...	Ribo-seq	ATG	strong	2	sORFs_org_Mouse	sORF	E14, R1E
1310387	147	GTG ...	VTA ...	Ribo-seq	GTG		3	sORFs_org_Mouse	sORF	Brain, E14, R1E
1310166	42	ACG ...	TGT ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	sORF	E14
1307507	54	ATG ...	MGS ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	sORF	Brain, E14, R1E
1309539	81	AGG ...	RRS ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	E14
1178969	114	AAG ...	KKR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
1309511	36	ACG ...	TGN ...	Ribo-seq	ACG	strong	1	sORFs_org_Mouse	sORF	E14
1179317	192	ATC ...	IGT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14
1179528	102	GTG ...	VKR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	Brain, E14
945886	69	AAG ...	KGC ...	Ribo-seq	AAG	strong	1	sORFs_org_Mouse	sORF	E14
786760	69	CTG ...	LPS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	Brain, E14, R1E
1178833	183	AAG ...	KFE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	E14
680430	207	CTG ...	LRE ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	E14, R1E
1309530	258	ATC ...	IGT ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	E14

Export data