Transcript 118255

Transcript

ID CARD

MetamORF ID

118255

ENSMUST00000078977

Name

Abi1-201

Strand

Biotype

protein_coding

Start-end positions

22940369-23040230

CDS Start-stop positions

22941872-23040065

CDS Relative positions

Sequences

Transcript sequence

GGA ...

Genome browsers

UCSC

Gene

NCBI:11308

Aliases

abi-1,
Abi1, E3B1, ENSMUSG00000058835,
MGI:104913, NAP1, NCBI:11308,
OFF:Abi1, Ssh3bp1

Chr 2

ORFs

28 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
118254	186	CTG ...	LWP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
50825	126	ATG ...	MCS ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
964768	33	AGG ...	RRR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
46942	126	GTG ...	VGG ...	Ribo-seq	GTG	strong	3	sORFs_org_Mouse	Overlapping sORF Upstream	MEF, Neutrophil
969477	99	ATT ...	IGQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
122594	156	ATG ...	MLM ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
116736	108	GTG ...	VEN ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC
968662	45	ATA ...	ICR ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
51393	141	ATG ...	MHW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Liver
114974	120	TTG ...	LLI ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
48151	111	CTG ...	LVC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Overlapping sORF Upstream	MEF, Neutrophil
125519	168	CTG ...	LLS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
109460	45	ATG ...	MMS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
14889	51	CTG ...	LWI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
108943	39	TTG ...	LEA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
966598	192	ATG ...	MHW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
123371	207	GTG ...	VDI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
118419	150	ATG ...	MEV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
45835	42	ATG ...	MRR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC
121942	210	CTG ...	LVD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
968316	36	AGG ...	RGG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC
964082	177	ATG ...	MCS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
47519	57	ATG ...	MRE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Overlapping sORF Upstream	BMDC, MEF
111883	66	ATG ...	MII ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
112475	48	CTG ...	LRG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Liver
109394	36	ATG ...	MMA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
109891	75	TTG ...	LQY ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
967631	126	AGG ...	RKR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	BMDC

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