Transcript 3997 | MetamORF

Transcript

ID CARD

MetamORF ID

3997

ENSMUST00000135333

Name

Abhd2-202

Strand

Biotype

processed_transcript

Start-end positions

79273254-79345371

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGT ...

Genome browsers

UCSC

Gene

NCBI:54608

Aliases

2210009N18Rik,
Abhd2, ENSMUSG00000039202, Labh-2,
LABH2, MGI:1914344, NCBI:54608,
OFF:Abhd2

Chr 7

ORFs

41 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
77301	78	GTG ...	VLN ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, Neutrophil, Testis
75025	36	CTG ...	LAE ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, Neutrophil, Spleen_B_cell, Testis
72244	102	TTG ...	LNL ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Testis, v6-5
601787	66	CTG ...	LDT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
73648	162	GTG ...	VFD ...	Ribo-seq	GTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, Neutrophil, NSC, Testis, v6-5
213766	42	GTG ...	VRS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, v6-5
74538	141	TTG ...	LYG ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis
218029	72	CTG ...	LPL ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
213505	78	TTG ...	LNI ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, Neutrophil
1028195	210	GTG ...	VWC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
76997	288	GTG ...	VRS ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
211545	42	TTG ...	LTM ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
77391	42	CTG ...	LTS ...	Ribo-seq	CTG		5	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Neutrophil, Testis
78066	66	CTG ...	LGA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, Liver, Neutrophil, Testis
232495	39	CTG ...	LLE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
75861	96	CTG ...	LKS ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Testis, v6-5
226243	144	CTG ...	LGE ...	Ribo-seq	CTG	strong	7	sORFs_org_Mouse	ncRNA sORF	3T3, E14, MEF, NSC, Spleen_B_cell
74869	150	GTG ...	VKL ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Testis, v6-5
212348	84	ATG ...	MVP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF
78074	204	CTG ...	LAE ...	Ribo-seq	CTG		13	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Liver, MEF, Neutrophil, NSC, R1E, Spleen_B_cell, Testis, v6-5
3996	36	GTG ...	VFE ...	Ribo-seq	GTG	moderate	6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Skin_tumor, v6-5
877045	63	CTG ...	LTS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF
1028480	186	CTG ...	LPK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, MEF
219077	36	ATG ...	MPR ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
212197	60	CTG ...	LIG ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil
232705	84	ATG ...	MSA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	3T3
234405	69	CTG ...	LRE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
75142	177	CTG ...	LIW ...	Ribo-seq	CTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
72506	111	GTG ...	VRC ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Testis, v6-5
225300	81	TTG ...	LPT ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
74897	144	CTG ...	LAA ...	Ribo-seq	CTG	strong	8	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, Testis, v6-5
75855	36	CTG ...	LLK ...	Ribo-seq	CTG	weak	7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Testis, v6-5
532812	120	GTG ...	VRS ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, E14, MEF, Neutrophil, NSC, Spleen_B_cell
211040	87	CTG ...	LEL ...	Ribo-seq	CTG	strong	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5
225447	54	CTG ...	LRS ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	ncRNA sORF	3T3, MEF
601449	75	TTG ...	LAH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
877382	33	CTG ...	LPF ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
234951	36	CTG ...	LES ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
216027	81	ATG ...	MSA ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	3T3, MEF, Neutrophil, Spleen_B_cell
212465	111	ATG ...	MTS ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC
212896	54	CTG ...	LSW ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, v6-5

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