Transcript 13097 | MetamORF

Transcript

ID CARD

MetamORF ID

13097

ENSMUST00000139013

Name

Abcg1-202

Strand

Biotype

retained_intron

Start-end positions

31057774-31098759

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:11307

Aliases

Abc8,
Abcg1, AW413978, ENSMUSG00000024030,
MGI:107704, NCBI:11307, OFF:Abcg1,
White

Chr 17

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
13096	45	TTG ...	LPT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Skin_tumor
479170	141	CTG ...	LKK ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
478986	42	GTG ...	VRV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
385374	72	CTG ...	LGN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
380693	99	ATG ...	MEC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1004926	75	GTG ...	VNI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
955067	300	ATT ...	IQQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
955372	42	ACG ...	TTC ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
386625	72	CTG ...	LVA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
954530	153	CTG ...	LMA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	BMDC
479530	207	GTG ...	VSV ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell
481913	99	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
383679	69	GTG ...	VAI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell
956323	219	AAG ...	KSV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
479359	189	GTG ...	VSS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
956614	33	AGG ...	RRR ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
478524	201	GTG ...	VDE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
954329	228	ACG ...	TEP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
481260	69	GTG ...	VSA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
482725	156	CTG ...	LLN ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Spleen_B_cell
480836	213	GTG ...	VCV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
480714	57	CTG ...	LKL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
478708	177	GTG ...	VDE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
956695	33	AGG ...	RLR ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
480018	51	CTG ...	LQE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
955958	42	ACG ...	TWM ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
385316	108	TTG ...	LKG ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
1004544	132	GTG ...	VDN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
386575	57	GTG ...	VES ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, Brain

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