Transcript 996374

Transcript

ID CARD

MetamORF ID

996374

ENSMUST00000192716

Name

Mpzl1-204

Strand

Biotype

retained_intron

Start-end positions

165604230-165605753

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:68481

Aliases

1110007A10Rik,
ENSMUSG00000026566, MGI:1915731, Mpzl1,
NCBI:68481, OFF:Mpzl1, PZR

Chr 1

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
996373	126	GTG ...	VFL ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
1003530	87	GTG ...	VVL ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain
1535896	132	TTG ...	LGG ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
1007992	132	CTG ...	LLV ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
1035848	111	GTG ...	VVV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
1533576	69	CTG ...	LLI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1006514	108	GTG ...	VVG ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain
1499190	45	TTG ...	LLC ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1539262	57	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
160058	42	TTG ...	LCG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1562704	120	CTG ...	LVW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1493866	84	ATG ...	MAP ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
1363229	93	CTG ...	LFT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1491726	66	ATG ...	MSK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1495495	33	CTG ...	LDT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
104963	51	CTG ...	LTL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
999291	129	TTG ...	LVF ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain
1008193	105	GTG ...	VGT ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	Brain

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