Transcript 977461

Transcript

ID CARD

MetamORF ID

977461

ENSMUST00000168396

Name

Hnrnpd-205

Strand

Biotype

nonsense_mediated_decay

Start-end positions

99962283-99978624

CDS Start-stop positions

99966156-99978624

CDS Relative positions

Sequences

Transcript sequence

ATG ...

Genome browsers

UCSC

Gene

NCBI:11991

Aliases

Auf1,
ENSMUSG00000000568, Hnrnpd, Hnrpd,
MGI:101947, NCBI:11991, OFF:Hnrnpd

Chr 5

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
185096	117	CTG ...	LKL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF
1736145	45	GTG ...	VKN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
181929	57	GTG ...	VKK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, R1E
1062693	72	GTG ...	VLF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
63441	42	GTG ...	VGS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	R1E
2134	51	CTG ...	LGH ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1468174	147	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC
901738	63	ATC ...	ILS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
977542	72	AAG ...	KEE ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative Downstream NMD sORF	MEF
179163	123	ATG ...	MDI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, R1E
1853	63	CTG ...	LHS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF
521513	30	TTG ...	LCY ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF
176242	189	CTG ...	LQA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, MEF, R1E
522751	36	TTG ...	LAL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF
180719	132	ATG ...	MAT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, R1E
64334	90	CTG ...	LRP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
178768	162	CTG ...	LKD ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, MEF
178005	192	GTG ...	VLQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, MEF, R1E

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