Transcript 9653 | MetamORF

Transcript

ID CARD

MetamORF ID

9653

ENSMUST00000169845

Name

Sptlc2-203

Strand

Biotype

retained_intron

Start-end positions

87308070-87343848

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TAC ...

Genome browsers

UCSC

Gene

NCBI:20773

Aliases

ENSMUSG00000021036,
LCB2, LCB2a, MGI:108074,
NCBI:20773, OFF:Sptlc2, Spt2,
Sptlc2

Chr 12

ORFs

61 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1297229	132	AAG ...	KRN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1297242	213	AAG ...	KEM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1298606	225	AGG ...	RRR ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
9770	90	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Spleen_B_cell, v6-5
1296823	39	AAG ...	KKI ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
939499	84	ATT ...	IIT ...	Ribo-seq	ATT		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
324058	198	GTG ...	VIA ...	Ribo-seq	GTG		8	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, R1E, v6-5
327366	159	CTG ...	LID ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, R1E, Spleen_B_cell
9612	48	CTG ...	LDR ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Spleen_B_cell, v6-5
939845	39	ATT ...	ILP ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
938777	96	TTG ...	LMR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
9757	60	CTG ...	LVP ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Spleen_B_cell, v6-5
1298468	66	AAG ...	KRD ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
940468	45	ATT ...	ILT ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
939823	57	AAG ...	KMP ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
458306	78	CTG ...	LLP ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Intronic sORF	3T3, E14, Spleen_B_cell, v6-5
661295	90	TTG ...	LLS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
324998	33	CTG ...	LRT ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, MEF, v6-5
939273	42	AGG ...	RPF ...	Ribo-seq	AGG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
9846	57	GTG ...	VPL ...	Ribo-seq	GTG	weak	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, Spleen_B_cell, v6-5
940098	30	ATT ...	ITL ...	Ribo-seq	ATT	weak	2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
9732	159	CTG ...	LDE ...	Ribo-seq	CTG		8	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell, v6-5
1298445	108	ATA ...	IDE ...	Ribo-seq	ATA	strong	1	sORFs_org_Mouse	Intronic sORF	E14
325080	54	ATG ...	MPL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF
326034	147	CTG ...	LRT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, R1E, Spleen_B_cell
1298941	183	AAG ...	KKY ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	E14
1297652	234	AGG ...	RYF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1298616	84	ATT ...	IES ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1344378	117	TTG ...	LCH ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
1299313	54	AAG ...	KNV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
322712	135	CTG ...	LKR ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, R1E, Spleen_B_cell, v6-5
9946	93	CTG ...	LDP ...	Ribo-seq	CTG		10	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell, v6-5
1298901	42	AGG ...	RRI ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
1297029	36	GTG ...	VHH ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	E14
939196	195	ATC ...	IYG ...	Ribo-seq	ATC		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
1297591	30	AGG ...	RGL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Intronic sORF	E14
9743	87	CTG ...	LQL ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, MEF, Spleen_B_cell, v6-5
938820	78	AAG ...	KYS ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
459896	36	TTG ...	LGL ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	3T3, E14, Spleen_B_cell
9652	111	GTG ...	VVD ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, R1E, Skin_tumor, Spleen_B_cell, v6-5
327645	108	GTG ...	VGF ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, Spleen_B_cell, v6-5
460023	51	ATG ...	MRL ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF, Spleen_B_cell
939451	45	AAG ...	KTL ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
458889	93	TTG ...	LWW ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, E14, Spleen_B_cell, v6-5
326826	48	TTG ...	LFM ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, R1E, Spleen_B_cell
9902	117	TTG ...	LKE ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, Spleen_B_cell, v6-5
325641	42	ATG ...	MVS ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	3T3, E14, MEF, R1E, Spleen_B_cell
1298525	249	TTG ...	LAE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1296554	75	ATT ...	IVY ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
325128	123	GTG ...	VYA ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E, Spleen_B_cell
9864	33	CTG ...	LCM ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, E14, MEF, Skin_tumor
9675	165	TTG ...	LYL ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Intronic sORF	3T3, E14, Liver, MEF, R1E, Skin_tumor, Spleen_B_cell, v6-5
321054	39	CTG ...	LEE ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
665135	36	TTG ...	LPV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, E14
326953	33	ATG ...	MAM ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	3T3, Brain
661961	63	TTG ...	LSP ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, v6-5
1298185	57	ATC ...	IWM ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Intronic sORF	E14
321582	36	GTG ...	VLC ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, MEF
940293	114	AAG ...	KEI ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
25329	36	GTG ...	VLQ ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	3T3, E14, R1E
322695	111	GTG ...	VVG ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, Brain, E14, Liver, Spleen_B_cell, v6-5

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