Transcript 9616 | MetamORF

Transcript

ID CARD

MetamORF ID

9616

ENSMUST00000021603

Name

Fbln5-201

Strand

Biotype

protein_coding

Start-end positions

101746565-101819055

CDS Start-stop positions

101750742-101818750

CDS Relative positions

Sequences

Transcript sequence

AGT ...

Genome browsers

UCSC

Gene

NCBI:23876

Aliases

A55,
DANCE, ENSMUSG00000021186, EVEC,
Fbln5, MGI:1346091, NCBI:23876,
OFF:Fbln5

Chr 12

ORFs

72 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
662534	111	ATG ...	MNV ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, v6-5
1133798	120	TTG ...	LMN ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
661817	105	GTG ...	VST ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, v6-5
662493	30	GTG ...	VPS ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1604533	150	TTG ...	LMN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
663568	54	CTG ...	LPS ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, MEF, v6-5
660658	105	CTG ...	LLT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
1607199	108	ATG ...	MFQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
666754	93	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
1133792	129	GTG ...	VWM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
667276	156	ATG ...	MWC ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
664051	45	TTG ...	LMN ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
9615	54	GTG ...	VCN ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Skin_tumor, v6-5
664057	51	CTG ...	LCS ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1132760	189	GTG ...	VCQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
666996	63	CTG ...	LAT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
662336	162	GTG ...	VHP ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
666127	138	ATG ...	MIT ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, v6-5
667613	117	CTG ...	LPT ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
667548	132	CTG ...	LLT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
663825	36	CTG ...	LCP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	sORF Upstream	3T3
661984	63	GTG ...	VPI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
1134113	105	ATG ...	MVT ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
664269	183	CTG ...	LST ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
667637	90	GTG ...	VPI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
664593	102	GTG ...	VSR ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative sORF Upstream	3T3, v6-5
667336	213	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
666212	210	CTG ...	LST ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, v6-5
663582	129	ATG ...	MWC ...	Ribo-seq	ATG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
661866	36	TTG ...	LLQ ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1606724	147	ATG ...	MNV ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
665230	33	ATG ...	MGT ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF
667313	129	CTG ...	LTS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1133216	30	CTG ...	LSS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
666857	171	TTG ...	LSA ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
664669	42	ATG ...	MKC ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	sORF Upstream	3T3, Glioma, Liver, MEF, MESC, v6-5
1133810	234	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
661461	96	GTG ...	VQL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1134065	159	TTG ...	LGI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
665323	66	CTG ...	LVP ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, v6-5
1606600	135	ATG ...	MVT ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1132308	123	ATG ...	MWT ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
666137	45	CTG ...	LVS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1133843	144	ATG ...	MKA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
664961	51	CTG ...	LLP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
666783	78	ATG ...	MFQ ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
664094	39	CTG ...	LCQ ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
9904	33	GTG ...	VQP ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	InCDS Overlapping sORF	MEF, Skin_tumor, v6-5
663552	186	CTG ...	LLS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
1606083	30	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
663561	102	CTG ...	LTS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
663760	36	CTG ...	LAT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, v6-5
1131722	51	GTG ...	VFI ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	v6-5
660534	75	CTG ...	LST ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
662063	36	CTG ...	LLV ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
664572	33	TTG ...	LTW ...	Ribo-seq	TTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
331337	99	CTG ...	LLP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, MEF, v6-5
1134218	84	GTG ...	VQM ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
25125	42	ATG ...	MNA ...	Ribo-seq	ATG	weak	6	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, Testis
664495	54	GTG ...	VYL ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
662580	63	GTG ...	VCE ...	Ribo-seq	GTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
662550	45	CTG ...	LHR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF
1134170	117	ATG ...	MNV ...	Ribo-seq	ATG		4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
420131	45	CTG ...	LNQ ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF Upstream	3T3, C2C12, v6-5
1131171	39	CTG ...	LST ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1133231	63	CTG ...	LKE ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1705560	51	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
1606847	114	GTG ...	VQM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
664008	36	TTG ...	LIP ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, MEF, v6-5
664827	72	CTG ...	LQR ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
664200	207	TTG ...	LSW ...	Ribo-seq	TTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, MEF, v6-5
1132247	111	GTG ...	VQQ ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5

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