Transcript 960337

Transcript

ID CARD

MetamORF ID

960337

ENSMUST00000163902

Name

Anxa1-202

Strand

Biotype

retained_intron

Start-end positions

20373556-20375587

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAT ...

Genome browsers

UCSC

Gene

NCBI:16952

Aliases

Anx-1,
Anx-A1, Anxa1, C430014K04Rik,
ENSMUSG00000024659, Lpc-1, Lpc1,
MGI:96819, NCBI:16952, OFF:Anxa1

Chr 19

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
961555	63	ATG ...	MES ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil
960691	39	ATG ...	MSL ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
961687	39	GTG ...	VET ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
1634521	42	GTG ...	VVE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
961814	93	ATG ...	MKS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, Neutrophil
14303	84	ATG ...	MKP ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil
960575	123	ATC ...	IKV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
960336	66	ATG ...	MKK ...	Ribo-seq	ATG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, MEF, Neutrophil
14457	168	TTG ...	LIR ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	E14, MEF, Neutrophil
1050447	117	ATG ...	MSN ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
962929	75	AAG ...	KET ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
960992	126	ATT ...	ILP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	BMDC
14192	36	CTG ...	LHR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, Neutrophil
962452	162	AGG ...	RIM ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
962478	102	AAG ...	KYG ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC

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