Transcript 95775 | MetamORF

Transcript

ID CARD

MetamORF ID

95775

ENSMUST00000137916

Name

Slc25a12-203

Strand

Biotype

processed_transcript

Start-end positions

71312468-71328840

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:78830

Aliases

2610002D09Rik,
AI839531, B230107K20Rik, BB129864,
ENSMUSG00000027010, MGI:1926080, NCBI:78830,
OFF:Slc25a12, Slc25a12

Chr 2

ORFs

11 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
108292	69	GTG ...	VTS ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	3T3, Brain
109269	96	CTG ...	LHF ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil, R1E
967957	102	ATC ...	IRL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
113216	186	TTG ...	LEH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
95774	159	CTG ...	LKD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
967557	141	ATC ...	IHH ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
115365	30	ATG ...	MWN ...	Ribo-seq	ATG		5	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, Neutrophil, NSC, v6-5
103623	93	TTG ...	LGR ...	Ribo-seq	TTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E, v6-5
103316	192	TTG ...	LQL ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, Neutrophil
967858	72	AAG ...	KHL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
101451	108	ATG ...	MSR ...	Ribo-seq	ATG	moderate	8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, E14, MEF, Neutrophil, R1E, v6-5

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