Transcript 954265

Transcript

ID CARD

MetamORF ID

954265

ENSMUST00000129891

Name

Gm20547-201

Strand

Biotype

protein_coding

Start-end positions

34856426-34872507

CDS Start-stop positions

34856427-

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

Gm20547

Aliases

Gm20547

Chr 17

ORFs

54 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
957454	75	CTG ...	LMR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
1456064	45	ATG ...	MGT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
954589	54	ATG ...	MGK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	BMDC
856564	168	TTG ...	LKT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	BMDC
855989	237	CTG ...	LQL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
955270	69	AGG ...	RTM ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	BMDC
956191	45	TTG ...	LKM ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	sORF	BMDC
957332	66	ATA ...	IKK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	BMDC
856442	108	ATG ...	MLQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse	sORF	BMDC
1410931	174	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	Liver
956351	48	ACG ...	TII ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	BMDC
955804	39	ACG ...	TVP ...	Ribo-seq	ACG	moderate	1	sORFs_org_Mouse	sORF	BMDC
855905	237	ATG ...	MEL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
854482	63	ATG ...	MSI ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	BMDC
955343	51	AGG ...	RTL ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	sORF	BMDC
955386	60	ATA ...	IKK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	BMDC
956618	33	TTG ...	LFT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	BMDC
854439	75	CTG ...	LSP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
856207	240	ATG ...	MME ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
1455783	51	CTG ...	LRM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
956826	45	AGG ...	RIW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	sORF	BMDC
956111	39	ATC ...	ILP ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	sORF	BMDC
856429	243	GTG ...	VMM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	BMDC
957557	63	ATC ...	IPG ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	BMDC
954901	57	ATC ...	IMC ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF	BMDC
955649	93	CTG ...	LQP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
957458	120	CTG ...	LSL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
957660	39	TTG ...	LFT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	sORF	BMDC
956473	51	AAG ...	KDM ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF	BMDC
855907	231	CTG ...	LDT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	BMDC
954264	48	ATG ...	MPG ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	sORF	BMDC
855754	66	CTG ...	LHG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	BMDC
957310	81	GTG ...	VGQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	BMDC
856476	201	TTG ...	LGQ ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF	BMDC
957219	147	ATG ...	MIR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
957496	54	ACG ...	TII ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	BMDC
954455	51	ATT ...	IPG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC
957323	129	GTG ...	VET ...	Ribo-seq	GTG		1	sORFs_org_Mouse	sORF	BMDC
957156	165	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	sORF	BMDC
957723	57	ATT ...	IPG ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC
955474	45	ATG ...	MRP ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	BMDC
957387	45	ATA ...	ISN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	BMDC
854570	63	ATG ...	MDQ ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF	BMDC
954461	45	CTG ...	LSQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF	BMDC
1455769	54	ATG ...	MLR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC
957726	135	ATT ...	IPS ...	Ribo-seq	ATT		1	sORFs_org_Mouse	sORF	BMDC
956462	39	ATA ...	ISN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	sORF	BMDC
954825	84	AGG ...	RSC ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	sORF	BMDC
954304	45	AAG ...	KSR ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	sORF	BMDC
855070	78	GTG ...	VAW ...	Ribo-seq	GTG		2	sORFs_org_Mouse	sORF	BMDC
955637	48	ACG ...	TSL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	sORF	BMDC
956121	60	ATA ...	ILM ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	sORF	BMDC
1410875	168	CTG ...	LVS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	sORF	Liver
957114	147	ATG ...	MAC ...	Ribo-seq	ATG		1	sORFs_org_Mouse	sORF	BMDC

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