Transcript 94930 | MetamORF

Transcript

ID CARD

MetamORF ID

94930

ENSMUST00000129854

Name

Serinc3-202

Strand

Biotype

processed_transcript

Start-end positions

163636831-163645125

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:26943

Aliases

AA959945,
AA960047, AIGP1, DIFF33,
ENSMUSG00000017707, MGI:1349457, NCBI:26943,
OFF:Serinc3, Serinc3, Tde1,
TMS-1

Chr 2

ORFs

16 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
16158	51	TTG ...	LHH ...	Ribo-seq	TTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
116604	45	TTG ...	LLW ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, v6-5
48252	87	GTG ...	VTC ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, NSC, v6-5
46105	138	GTG ...	VKE ...	Ribo-seq	GTG	weak	8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
15664	57	GTG ...	VVH ...	Ribo-seq	GTG	strong	14	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
1010413	123	GTG ...	VSC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
96067	42	CTG ...	LWP ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	Brain, v6-5
97862	204	CTG ...	LCS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, Neutrophil, NSC, Spleen_B_cell
96931	33	ATG ...	MSA ...	Ribo-seq	ATG	moderate	10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, MEF, Neutrophil, NSC, v6-5
47306	111	TTG ...	LIQ ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, MEF, NSC, v6-5
15052	54	GTG ...	VHH ...	Ribo-seq	GTG	moderate	13	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
110743	207	CTG ...	LLC ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, Neutrophil, NSC, Spleen_B_cell
492645	42	ATG ...	MAH ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Spleen_B_cell
45848	147	CTG ...	LDS ...	Ribo-seq	CTG	moderate	8	sORFs_org_Mouse	ncRNA sORF	3T3, Brain, Liver, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
43926	63	CTG ...	LCI ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	ncRNA sORF	Brain, E14, NSC, v6-5
813325	129	TTG ...	LRI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil

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