Transcript 94650 | MetamORF

Transcript

ID CARD

MetamORF ID

94650

ENSMUST00000194505

Name

Igsf8-207

Strand

Biotype

protein_coding

Start-end positions

172318310-172319835

CDS Start-stop positions

-172319408

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

NCBI:140559

Aliases

ENSMUSG00000038034,
ESTM34, EWI-2, Igsf8,
KCT-4, MGI:2154090, NCBI:140559,
OFF:Igsf8, PGRL

Chr 1

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
97016	87	CTG ...	LGA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain
385725	60	CTG ...	LGP ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF	3T3, Brain
669604	102	TTG ...	LWV ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	sORF	3T3, BMDC
659365	111	CTG ...	LLS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	sORF	3T3, BMDC
565158	117	CTG ...	LAL ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF	3T3, BMDC
313553	45	GTG ...	VKR ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	sORF	3T3, Brain
643736	96	GTG ...	VEW ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	3T3, BMDC
203113	63	CTG ...	LVP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain
392304	108	CTG ...	LMQ ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
340662	276	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF	Brain
359168	33	GTG ...	VLV ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	Brain
691687	36	GTG ...	VWS ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF	3T3
677998	78	GTG ...	VWQ ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	sORF	3T3, BMDC
346320	105	ATG ...	MQA ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
391109	72	ATG ...	MFE ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	sORF	3T3, Brain
94649	120	CTG ...	LPG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	sORF	3T3, BMDC, Brain
399652	102	CTG ...	LCP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	sORF	3T3, Brain

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