Transcript 9449 | MetamORF

Transcript

ID CARD

MetamORF ID

9449

ENSMUST00000187733

Name

Trip12-209

Strand

Biotype

nonsense_mediated_decay

Start-end positions

84724577-84731703

CDS Start-stop positions

84730579-

CDS Relative positions

Sequences

Transcript sequence

CCA ...

Genome browsers

UCSC

Gene

NCBI:14897

Aliases

1110036I07Rik,
6720416K24Rik, AA410158, ENSMUSG00000026219,
Gtl6, MGI:1309481, NCBI:14897,
OFF:Trip12, TRIP-12, Trip12

Chr 1

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
9747	96	TTG ...	LFE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Skin_tumor
1285518	102	ATC ...	IAK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	E14
1261862	93	AAG ...	KVF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
1192541	267	TTG ...	LET ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
1290982	228	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	E14
1180645	213	ACG ...	TLP ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF	E14
1192906	222	TTG ...	LDF ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
1202230	87	CTG ...	LCG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	NMD sORF	E14, NSC
468188	75	TTG ...	LTH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
1308224	30	ATC ...	IFS ...	Ribo-seq	ATC		1	sORFs_org_Mouse	NMD sORF	E14
1205133	45	TTG ...	LSD ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
1193741	237	GTG ...	VED ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	E14
1291482	165	AAG ...	KWM ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
1202251	102	AGG ...	REG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
9448	54	TTG ...	LFL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	Skin_tumor
14301	105	GTG ...	VKF ...	Ribo-seq	GTG		1	sORFs_org_Mouse	NMD sORF	Skin_tumor
72943	138	TTG ...	LTS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	NMD sORF	E14
1191759	57	AGG ...	RLF ...	Ribo-seq	AGG		1	sORFs_org_Mouse	NMD sORF	E14
1193812	255	ACG ...	TMN ...	Ribo-seq	ACG		1	sORFs_org_Mouse	NMD sORF	E14
19156	177	CTG ...	LPF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	NMD sORF	E14
1204076	90	AAG ...	KMK ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14
1253484	114	ATT ...	IDP ...	Ribo-seq	ATT		1	sORFs_org_Mouse	NMD sORF	E14
1199936	51	AAG ...	KTL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	NMD sORF	E14

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