Transcript 94082 | MetamORF

Transcript

ID CARD

MetamORF ID

94082

ENSMUST00000131435

Name

Snrnp200-202

Strand

Biotype

retained_intron

Start-end positions

127238092-127239960

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTC ...

Genome browsers

UCSC

Gene

NCBI:320632

Aliases

A330064G03Rik,
Ascc3l1, BC011390, ENSMUSG00000003660,
HELIC2, MGI:2444401, NCBI:320632,
OFF:Snrnp200, Snrnp200, U5-200-KD,
U5-200KD

Chr 2

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1212644	129	GTG ...	VLV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
970031	51	TTG ...	LTS ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF
1723406	84	CTG ...	LHT ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
109306	78	GTG ...	VAR ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	Brain, R1E
966952	75	AGG ...	RKS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1009041	63	CTG ...	LKQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain, E14
730338	84	ATG ...	MGG ...	Ribo-seq	ATG	strong	3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, R1E
1723699	102	ATG ...	MLC ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1009168	111	TTG ...	LLQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E
968693	30	AAG ...	KPC ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1207794	123	GTG ...	VQL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
105162	30	GTG ...	VVD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
1206933	144	ATC ...	IME ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	E14
1213441	117	CTG ...	LER ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
1211306	87	ATT ...	IAD ...	Ribo-seq	ATT		1	sORFs_org_Mouse	Intronic sORF	E14
1548960	69	CTG ...	LLW ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
809483	162	GTG ...	VES ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	B_cell, Brain, E14, MEF
1009226	108	CTG ...	LAQ ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E
740676	123	CTG ...	LAA ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E
1210615	54	CTG ...	LPH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, R1E
966780	30	ATG ...	MKN ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	BMDC, MEF
116081	42	CTG ...	LSY ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Intronic sORF	Brain, E14, R1E
94081	57	GTG ...	VFL ...	Ribo-seq	GTG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF
1212813	78	AGG ...	RRK ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Intronic sORF	E14
117342	102	TTG ...	LTD ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	Brain, MEF, R1E

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