Transcript 93964 | MetamORF

Transcript

ID CARD

MetamORF ID

93964

ENSMUST00000150349

Name

Rpn2-210

Strand

Biotype

processed_transcript

Start-end positions

157279569-157290711

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

NCBI:20014

Aliases

1300012C06Rik,
AV261018, ENSMUSG00000027642, MGI:98085,
NCBI:20014, OFF:Rpn2, Rpn-2,
Rpn2

Chr 2

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
44223	42	ATG ...	MQP ...	Ribo-seq	ATG		7	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
498166	108	GTG ...	VFR ...	Ribo-seq	GTG		8	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
50770	201	CTG ...	LPS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	E14, MEF, R1E
115346	129	GTG ...	VKT ...	Ribo-seq	GTG	weak	7	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
493476	174	GTG ...	VER ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, Neutrophil, Spleen_B_cell
1053076	114	GTG ...	VDS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
1502613	33	ATG ...	MRP ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
814081	153	CTG ...	LDR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
813964	132	TTG ...	LES ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Neutrophil
968813	126	AAG ...	KTP ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
50103	168	TTG ...	LGY ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, R1E, v6-5
492461	243	CTG ...	LLA ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
807961	165	CTG ...	LKA ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	MEF, Neutrophil
493702	114	TTG ...	LPR ...	Ribo-seq	TTG	weak	7	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
965607	228	ATC ...	ITA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
967024	99	AAG ...	KRV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
965970	69	ATC ...	IPA ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
44054	30	TTG ...	LGY ...	Ribo-seq	TTG		5	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Spleen_B_cell, v6-5
740137	75	TTG ...	LGF ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, NSC
412613	240	TTG ...	LAL ...	Ribo-seq	TTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
731976	99	ATG ...	MQL ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, Neutrophil, v6-5
45500	42	GTG ...	VPL ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
1502127	42	CTG ...	LFQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	NSC
965590	108	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
496788	234	CTG ...	LTI ...	Ribo-seq	CTG		8	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, MEF, Neutrophil, NSC, Spleen_B_cell
736842	93	TTG ...	LQH ...	Ribo-seq	TTG	weak	5	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, Neutrophil, NSC, v6-5
48790	72	TTG ...	LIP ...	Ribo-seq	TTG		8	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell, v6-5
48708	63	CTG ...	LPS ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, NSC, Spleen_B_cell, v6-5
492276	207	CTG ...	LTP ...	Ribo-seq	CTG		7	sORFs_org_Mouse	ncRNA sORF	E14, MEF, Neutrophil, NSC, Spleen_B_cell
1501542	54	ATG ...	MKP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	MEF, NSC

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