Transcript 938555

Transcript

ID CARD

MetamORF ID

938555

ENSMUST00000157041

Name

Hif1a-205

Strand

Biotype

processed_transcript

Start-end positions

73937670-73939881

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:15251

Aliases

AA959795,
bHLHe78, ENSMUSG00000021109, HIF-1-alpha,
HIF1-alpha, Hif1a, HIF1alpha,
MGI:106918, MOP1, NCBI:15251,
OFF:Hif1a

Chr 12

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
459743	75	ATG ...	MSG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
458626	51	CTG ...	LSY ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
660406	129	TTG ...	LNQ ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
664730	81	GTG ...	VDM ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	MEF
460358	102	TTG ...	LIS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
938554	57	AAG ...	KQL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
939509	117	ATA ...	IQA ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
665582	93	TTG ...	LPK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	ncRNA sORF	MEF
938572	42	ATC ...	IFR ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
939796	39	ATA ...	IRR ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1297650	117	AGG ...	RML ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
458208	78	ATG ...	MLS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1298217	51	AAG ...	KNS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
458879	66	TTG ...	LKL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
939497	87	AGG ...	RSL ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
940289	99	GTG ...	VHC ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
940012	63	ATA ...	IYN ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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