Transcript 92939 | MetamORF

Transcript

ID CARD

MetamORF ID

92939

ENSMUST00000139454

Name

Gm28035-201

Strand

Biotype

nonsense_mediated_decay

Start-end positions

30240567-30282148

CDS Start-stop positions

30255176-30262123

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

Gm28035

Aliases

Gm28035

Chr 2

ORFs

23 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1368978	297	CTG ...	LHR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1209537	150	ATG ...	MSG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	NMD sORF Upstream	E14
15167	54	ATG ...	MCT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1640360	42	CTG ...	LSL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
100757	51	GTG ...	VHP ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14, Liver
92938	36	ATG ...	MCS ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain, MEF
1213644	198	CTG ...	LPS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	CDS NMD sORF	E14
412553	69	AAG ...	KEC ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14
103654	204	CTG ...	LNR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
1369366	273	CTG ...	LWY ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	E14
1212614	42	GTG ...	VKE ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	E14
108811	84	GTG ...	VQR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
99646	105	GTG ...	VTS ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Brain
105991	141	CTG ...	LDL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	Brain
115829	45	TTG ...	LLS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1640031	36	TTG ...	LEG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
1207278	66	TTG ...	LFS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	E14
1502787	42	TTG ...	LCT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	NSC
412181	78	ATG ...	MEQ ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Alternative NMD sORF Upstream	E14, Liver, MEF
1207615	168	CTG ...	LTQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	CDS NMD sORF	E14
1366982	39	ATG ...	MYC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14
1640470	87	TTG ...	LSR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF
105368	57	TTG ...	LTG ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF

Export data