Transcript 928860

Transcript

ID CARD

MetamORF ID

928860

ENSMUST00000160982

Name

Marc2-204

Strand

Biotype

retained_intron

Start-end positions

184828940-184845847

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GTA ...

Genome browsers

UCSC

Gene

NCBI:67247

Aliases

2810484M10Rik,
ENSMUSG00000073481, mARC1, Marc2,
MGI:1914497, Mosc2, Mtarc2,
NCBI:67247, OFF:Mtarc2

Chr 1

ORFs

31 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1398584	165	CTG ...	LQV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
451940	45	TTG ...	LDL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
69338	129	CTG ...	LKK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
1432190	189	CTG ...	LSV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
846234	255	CTG ...	LGT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
469433	156	CTG ...	LDG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
948548	222	ATC ...	ITL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
928859	105	ATA ...	IRS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	Intronic sORF	BMDC
113570	237	CTG ...	LFG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
935528	168	AAG ...	KTQ ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Intronic sORF	BMDC
1442380	51	GTG ...	VVH ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
856875	207	CTG ...	LQQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1401925	72	CTG ...	LGS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
942216	123	AAG ...	KKV ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Intronic sORF	BMDC
482633	39	TTG ...	LCW ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver
407312	108	TTG ...	LAS ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Liver
874893	198	GTG ...	VGT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
964138	198	ACG ...	TLE ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	BMDC
321003	168	CTG ...	LIS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	Liver
465008	60	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
890664	261	GTG ...	VAL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1402788	285	GTG ...	VVK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1409619	171	CTG ...	LPL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
464950	30	CTG ...	LKV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
41666	171	CTG ...	LKT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
849149	270	CTG ...	LAA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
318590	162	CTG ...	LAR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
1415836	183	GTG ...	VPV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Liver
217672	42	TTG ...	LVS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Liver
876348	276	CTG ...	LGL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver
1394023	210	TTG ...	LGN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	Liver

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