Transcript 92586 | MetamORF

Transcript

ID CARD

MetamORF ID

92586

ENSMUST00000192031

Name

Dcaf8-204

Strand

Biotype

retained_intron

Start-end positions

172148948-172189808

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GCT ...

Genome browsers

UCSC

Gene

NCBI:98193

Aliases

AA408877,
AA433120, AA792214, AU018973,
C76055, D1Dau35e, D1Ucla4,
Dcaf8, ENSMUSG00000026554, H326,
MGI:91860, NCBI:98193, OFF:Dcaf8,
Wdr42a

Chr 1

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
104532	153	TTG ...	LHF ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain
1000211	99	GTG ...	VVV ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
308277	81	TTG ...	LRA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
409071	33	GTG ...	VKM ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
998814	126	CTG ...	LAS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
347263	36	CTG ...	LVK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
390410	45	ATG ...	MTR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
1000724	96	GTG ...	VVW ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
22175	48	CTG ...	LPI ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
362501	72	GTG ...	VIA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
299785	240	GTG ...	VYE ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain
309901	69	CTG ...	LVV ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
346358	261	CTG ...	LGS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	Brain
351496	105	GTG ...	VTK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
345052	30	GTG ...	VGG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
400141	93	GTG ...	VWD ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain
368721	81	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain
387429	39	GTG ...	VGL ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
273299	45	CTG ...	LEL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
1015205	105	CTG ...	LKV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
307844	81	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
100076	297	GTG ...	VDS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
386317	30	TTG ...	LMR ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
226766	195	TTG ...	LQH ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	Brain
346598	126	GTG ...	VEL ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
92585	39	CTG ...	LKR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
328490	66	CTG ...	LSA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
348926	108	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
318614	84	GTG ...	VNS ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	Brain
390719	252	ATG ...	MSE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
385179	75	CTG ...	LYT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Brain
291894	141	TTG ...	LCT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain
352625	255	ATG ...	MMS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
357681	60	GTG ...	VNP ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	Brain
96247	33	TTG ...	LGA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	Brain
342733	111	TTG ...	LYS ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	Brain
376737	273	GTG ...	VTR ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Brain

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