Transcript 9243 | MetamORF

Transcript

ID CARD

MetamORF ID

9243

ENSMUST00000141719

Name

Rtn4-208

Strand

Biotype

processed_transcript

Start-end positions

29733773-29742347

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:68585

Aliases

1110020G17Rik,
AA407876, AA409940, AA960376,
ASY, C130026I10Rik, ENSMUSG00000020458,
MGI:1915835, mKIAA0886, mKIAA4153,
NCBI:68585, NgA, NOGO,
Nogo-A, Nogo-B, Nogo-C,
NSP-CL, OFF:Rtn4, Rtn4

Chr 11

ORFs

38 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
418991	57	AAG ...	KLS ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
21344	48	GTG ...	VIQ ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
1290460	126	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1285161	30	ATC ...	IPG ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
8473	60	GTG ...	VGI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
293438	63	CTG ...	LKL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
1290236	42	ATC ...	IQA ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	ncRNA sORF	E14
20924	93	TTG ...	LMW ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
9444	159	TTG ...	LRR ...	Ribo-seq	TTG		17	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Testis, v6-5
9242	216	TTG ...	LVQ ...	Ribo-seq	TTG		20	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
19650	57	CTG ...	LIS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	E14, MEF
1294233	60	ATT ...	IYL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1288972	39	ATT ...	IPV ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
1294806	168	ATA ...	IKE ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
302341	105	TTG ...	LLI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1285386	36	ATC ...	IQK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1284496	57	ATA ...	IDH ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
419253	30	AAG ...	KSV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
934485	39	ATG ...	MKA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
418882	63	AGG ...	RIY ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
308110	57	TTG ...	LPY ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
1289670	138	ATA ...	IKE ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
9472	246	TTG ...	LES ...	Ribo-seq	TTG		20	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
1293174	156	AGG ...	RRL ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1599491	39	ATG ...	MLG ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	MEF
1530059	186	TTG ...	LVQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
316466	66	GTG ...	VGI ...	Ribo-seq	GTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, MEF, NSC, Spleen_B_cell, v6-5
17496	216	TTG ...	LES ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF
17436	96	GTG ...	VLM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
293239	96	ATG ...	MGS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	MEF
9466	120	CTG ...	LKF ...	Ribo-seq	CTG		19	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
1291667	48	AGG ...	RPP ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1289887	45	AGG ...	RNW ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	ncRNA sORF	E14
1530852	117	GTG ...	VSV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
307639	84	TTG ...	LIT ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
9286	180	GTG ...	VNS ...	Ribo-seq	GTG		19	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, NSC, Skin_tumor, Spleen_B_cell, Testis, v6-5
1290549	72	ATC ...	ISF ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
419520	54	ATT ...	IYL ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14

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