Transcript 9228 | MetamORF

Transcript

ID CARD

MetamORF ID

9228

ENSMUST00000170895

Name

Guk1-205

Strand

Biotype

protein_coding

Start-end positions

59184047-59187741

CDS Start-stop positions

59184152-59187727

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:14923

Aliases

AA409738,
AL033299, AL033300, AV026611,
ENSMUSG00000020444, Gmk, Guk-1,
Guk1, MGI:95871, NCBI:14923,
OFF:Guk1

Chr 11

ORFs

9 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
655613	204	ATG ...	MST ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC
9419	63	CTG ...	LSS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor
314953	189	GTG ...	VCA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
9538	66	ATG ...	MLS ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, Skin_tumor
312684	168	CTG ...	LIC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
313664	96	GTG ...	VIL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
9227	72	TTG ...	LSM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Skin_tumor
9590	90	TTG ...	LQQ ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain, Skin_tumor
319457	144	TTG ...	LCS ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3

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