Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

9205

ID

ENSMUST00000020637

Name

Canx-201

Strand

-

Biotype

protein_coding

Start-end positions

50294467-50325673

CDS Start-stop positions

50296282-50311777

CDS Relative positions

-

Sequences

Transcript sequence

GGA ...

Gene

ID

NCBI:12330

Aliases

1110069N15Rik,
AI988026, Canx, Cnx,
D11Ertd153e, ENSMUSG00000020368, MGI:88261,
NCBI:12330, OFF:Canx


Chr 11

ORFs

119 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

930660 48

AAG ...

KKQ ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
292965 45

ATG ...

MLW ...

Ribo-seq
ATG weak 8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Glioma, Liver,
MEF, MESC, R1E
9555 138

CTG ...

LSI ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
21460 51

GTG ...

VLL ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, R1E
90962 90

ATG ...

MAL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
R1E
91407 39

ATG ...

MKK ...

Ribo-seq
ATG weak 7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Glioma, Liver, MEF,
MESC, R1E, Testis
935833 45

ATT ...

IPR ...

Ribo-seq
ATT weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
934496 126

ATA ...

ILL ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
23181 45

ATG ...

MRK ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, R1E, Testis
18716 66

ATG ...

MLK ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, R1E
933750 45

AGG ...

RQL ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
450665 30

CTG ...

LKI ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, R1E
419156 48

ACG ...

TRL ...

Ribo-seq
ACG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, C2C12
9417 120

CTG ...

LMQ ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
299206 30

CTG ...

LTR ...

Ribo-seq
CTG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, Neutrophil
19080 42

GTG ...

VSQ ...

Ribo-seq
GTG moderate 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, Testis
936820 90

ATC ...

IQM ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
8549 36

GTG ...

VFA ...

Ribo-seq
GTG moderate 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, Neutrophil,
R1E, Testis
937353 69

AAG ...

KMV ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
22110 54

ATG ...

MMT ...

Ribo-seq
ATG moderate 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
22071 54

CTG ...

LPL ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, BMDC,
Neutrophil, Testis
930409 123

AAG ...

KGS ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
8565 57

TTG ...

LPT ...

Ribo-seq
TTG moderate 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, Testis
17632 63

ATG ...

MDM ...

Ribo-seq
ATG strong 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, C2C12, Neutrophil,
R1E, Testis
932118 36

AAG ...

KKN ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
23915 99

GTG ...

VRE ...

Ribo-seq
GTG 21 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, C2C12, E14,
Liver, MEF, Neutrophil,
R1E, Spleen_B_cell, Testis,
v6-5
309656 39

CTG ...

LET ...

Ribo-seq
CTG strong 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Neutrophil, R1E
933257 33

AGG ...

REG ...

Ribo-seq
AGG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
991518 87

ATG ...

MWW ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Liver
90653 90

TTG ...

LEL ...

Ribo-seq
TTG moderate 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, MEF, Neutrophil,
R1E, Testis
18111 54

ATG ...

MVL ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, R1E
932537 39

ATA ...

ILK ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
21148 30

ATG ...

MIL ...

Ribo-seq
ATG moderate 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, Testis
22525 81

GTG ...

VML ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
19635 99

GTG ...

VER ...

Ribo-seq
GTG strong 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, Neutrophil,
R1E, Testis
23607 81

CTG ...

LSS ...

Ribo-seq
CTG 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
446647 72

GTG ...

VTV ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, Neutrophil
22157 84

CTG ...

LQL ...

Ribo-seq
CTG moderate 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
418844 105

ATA ...

ISV ...

Ribo-seq
ATA weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, C2C12
935223 33

AGG ...

RCS ...

Ribo-seq
AGG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
932913 30

ATT ...

IIR ...

Ribo-seq
ATT weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
419700 72

AGG ...

RLE ...

Ribo-seq
AGG 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC, C2C12
935356 66

AGG ...

RKK ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
316367 54

TTG ...

LIP ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, Neutrophil
937059 69

ATA ...

ISP ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
454032 39

CTG ...

LKS ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
293990 30

GTG ...

VLL ...

Ribo-seq
GTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Neutrophil, R1E
23350 171

GTG ...

VKI ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    CDS
    sORF
3T3, B_cell, BMDC,
Brain, R1E, Testis
18912 51

ATG ...

MTR ...

Ribo-seq
ATG moderate 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
9405 117

ATG ...

MQR ...

Ribo-seq
ATG 11 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Glioma, Liver,
MEF, MESC, Neutrophil,
R1E, Testis
23761 39

ATG ...

MMK ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, Testis
292042 30

CTG ...

LGV ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil
449094 36

TTG ...

LTT ...

Ribo-seq
TTG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Neutrophil, R1E
302983 33

TTG ...

LMI ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain
645804 30

ATG ...

MIG ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
Glioma, Liver, MEF,
MESC
22661 36

ATG ...

MKL ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Neutrophil,
Testis
938162 51

ATA ...

IPS ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
23742 42

CTG ...

LMM ...

Ribo-seq
CTG 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, Testis
23100 117

GTG ...

VCG ...

Ribo-seq
GTG 17 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Spleen_B_cell, Testis, v6-5
934601 141

ACG ...

TTR ...

Ribo-seq
ACG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
934503 42

AAG ...

KAQ ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
20459 84

TTG ...

LGG ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, Liver,
R1E
23626 69

ATG ...

MTG ...

Ribo-seq
ATG 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
9204 84

GTG ...

VVP ...

Ribo-seq
GTG 20 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, E14, Liver,
MEF, Neutrophil, R1E,
Skin_tumor, Spleen_B_cell, Testis,
v6-5
9209 30

CTG ...

LLM ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Testis
931517 36

AAG ...

KSV ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
19710 75

TTG ...

LRL ...

Ribo-seq
TTG weak 10 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, C2C12, Neutrophil,
R1E, Testis
319724 72

TTG ...

LTT ...

Ribo-seq
TTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E
298136 66

GTG ...

VWR ...

Ribo-seq
GTG weak 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, Neutrophil, R1E
17672 66

ATG ...

MMD ...

Ribo-seq
ATG weak 10 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Glioma, Liver,
MEF, MESC, Neutrophil,
R1E, Testis
21613 69

GTG ...

VML ...

Ribo-seq
GTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E
18324 60

ATG ...

MKT ...

Ribo-seq
ATG moderate 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
18219 114

TTG ...

LVQ ...

Ribo-seq
TTG moderate 10 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, Neutrophil,
R1E, Testis
8001 54

TTG ...

LKT ...

Ribo-seq
TTG moderate 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, R1E, Testis
21833 36

TTG ...

LKM ...

Ribo-seq
TTG moderate 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, C2C12, Neutrophil,
R1E, Testis
930344 57

AAG ...

KMV ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
419371 42

AAG ...

KTG ...

Ribo-seq
AAG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC, C2C12
90871 78

CTG ...

LLR ...

Ribo-seq
CTG weak 11 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, C2C12, Neutrophil,
R1E, Testis
19760 42

TTG ...

LTT ...

Ribo-seq
TTG weak 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, Neutrophil,
R1E
307229 36

ATG ...

MGG ...

Ribo-seq
ATG strong 8 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Glioma, Liver,
MEF, MESC, R1E
22257 75

CTG ...

LKK ...

Ribo-seq
CTG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
453131 48

CTG ...

LSP ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, BMDC,
Neutrophil
23789 108

ATG ...

MYF ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
937603 54

AGG ...

RES ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
19222 45

GTG ...

VVT ...

Ribo-seq
GTG strong 9 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Liver, Neutrophil,
Testis
451676 33

ATG ...

MKR ...

Ribo-seq
ATG weak 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, R1E
930639 72

AGG ...

RLM ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
931813 30

AAG ...

KRP ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
23622 123

ATG ...

MKR ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
455147 30

TTG ...

LPN ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, Neutrophil
18143 57

ATG ...

MMM ...

Ribo-seq
ATG moderate 9 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, C2C12, Neutrophil,
R1E, Testis
297855 30

CTG ...

LVH ...

Ribo-seq
CTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
R1E
18903 63

CTG ...

LKK ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, R1E
930937 162

ACG ...

TGP ...

Ribo-seq
ACG 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
BMDC
419308 51

AGG ...

REV ...

Ribo-seq
AGG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
C2C12
935907 33

ACG ...

TKR ...

Ribo-seq
ACG moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
937202 96

AGG ...

REP ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
BMDC
995979 270

TTG ...

LAI ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    CDS
    sORF
Brain
298463 81

CTG ...

LRH ...

Ribo-seq
CTG moderate 5 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell, BMDC,
Brain, Neutrophil
448477 78

ATG ...

MKK ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Neutrophil
22880 63

GTG ...

VLL ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, R1E, Testis
8265 60

GTG ...

VKL ...

Ribo-seq
GTG weak 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, R1E, Testis
937290 51

AAG ...

KMT ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
24036 57

CTG ...

LAV ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, R1E, Testis
23567 159

ATG ...

MKK ...

Ribo-seq
ATG 8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Glioma, Liver,
MEF, MESC, Neutrophil,
R1E, Testis
21044 33

ATG ...

MRK ...

Ribo-seq
ATG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
R1E
9428 48

ATG ...

MTL ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, Testis
21974 42

TTG ...

LIL ...

Ribo-seq
TTG weak 8 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
90717 45

CTG ...

LAV ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, R1E
456642 36

TTG ...

LFS ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
Liver, Neutrophil
22985 66

ATG ...

MVL ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
451323 39

CTG ...

LQH ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3, B_cell
22690 78

ATG ...

MLK ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, R1E,
Testis
930278 54

ATC ...

IAK ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
BMDC
445679 30

GTG ...

VWC ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, R1E
22784 84

ATG ...

MLS ...

Ribo-seq
ATG 12 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Glioma, Liver,
MEF, MESC, Neutrophil,
R1E, Testis
935657 60

AAG ...

KRR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
18210 45

GTG ...

VYM ...

Ribo-seq
GTG weak 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
R1E, Testis
9115 93

ATG ...

MRI ...

Ribo-seq
ATG moderate 8 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, BMDC,
Brain, Neutrophil, Testis

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5