Transcript 920389

Transcript

ID CARD

MetamORF ID

920389

ENSMUST00000211646

Name

Rab11fip1-206

Strand

Biotype

processed_transcript

Start-end positions

27165195-27174641

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:75767

Aliases

2010200K21Rik,
4833414G05Rik, ENSMUSG00000031488, MGI:1923017,
NCBI:75767, OFF:Rab11fip1, Rab11fip1,
Rcp

Chr 8

ORFs

10 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1824147	189	GTG ...	VWR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1327666	273	GTG ...	VIQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1328258	222	CTG ...	LGA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
80229	294	TTG ...	LRA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1327686	264	GTG ...	VGK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1820693	252	GTG ...	VIQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
920388	84	ATA ...	ISS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1825022	243	GTG ...	VGK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1328373	237	GTG ...	VSE ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1824825	162	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E

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