Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

92021

ID

ENSMUST00000025729

Name

Tnks2-201

Strand

+

Biotype

protein_coding

Start-end positions

36834232-36893477

CDS Start-stop positions

36834538-36890803

CDS Relative positions

-

Sequences

Transcript sequence

TCC ...

Gene

ID

NCBI:74493

Aliases

5430432P15Rik,
AA517131, AI662480, ARTD6,
ENSMUSG00000024811, MGI:1921743, NCBI:74493,
OFF:Tnks2, Tank2, TNKS-2,
Tnks2


Chr 19

ORFs

158 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

1200912 42

ACG ...

TDT ...

Ribo-seq
ACG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
409513 81

TTG ...

LEV ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
MEF, NSC, v6-5
1203081 132

GTG ...

VQT ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC
1364380 57

ATG ...

MFS ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, NSC
726330 57

GTG ...

VNC ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
409977 135

CTG ...

LEF ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
1200887 96

AAG ...

KQP ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
723432 48

GTG ...

VVT ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
410002 96

ATG ...

MLK ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, NSC, v6-5
1867830 66

GTG ...

VLY ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1007571 42

GTG ...

VMQ ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1159251 72

ATG ...

MCK ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, v6-5
1501030 186

ATG ...

MKL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
1202999 33

AAG ...

KIY ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
410609 189

CTG ...

LRE ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
R1E, v6-5
1364220 99

ATG ...

MKQ ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, R1E
1635391 54

CTG ...

LMI ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1363862 42

CTG ...

LHT ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
92020 75

CTG ...

LMS ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
R1E, v6-5
726481 33

CTG ...

LNF ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, B_cell, MEF,
v6-5
725970 75

GTG ...

VAP ...

Ribo-seq
GTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
NSC, R1E, v6-5
1158776 33

TTG ...

LQN ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
1203609 48

ATA ...

IQQ ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1158659 54

ATG ...

MGV ...

Ribo-seq
ATG strong 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
720692 36

TTG ...

LFS ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
v6-5
725412 93

CTG ...

LLH ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1364918 54

GTG ...

VMA ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1202391 30

ATA ...

IQM ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1499945 33

ATG ...

MNF ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
1201957 105

ATG ...

MVI ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC
1867656 57

CTG ...

LHE ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
805222 39

ATG ...

MKL ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, NSC,
v6-5
725738 150

GTG ...

VLH ...

Ribo-seq
GTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, R1E,
v6-5
1633177 39

GTG ...

VNE ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Downstream
    sORF
MEF
1869713 42

ATG ...

MLQ ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
408770 210

CTG ...

LRR ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, R1E,
Spleen_B_cell
1157300 42

ATG ...

MGL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
410502 102

TTG ...

LYN ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
R1E, v6-5
720167 120

TTG ...

LSS ...

Ribo-seq
TTG moderate 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, R1E,
v6-5
410588 72

ATG ...

MSM ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, BMDC, Brain,
E14, R1E, v6-5
1202854 51

AAG ...

KAC ...

Ribo-seq
AAG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1159282 57

CTG ...

LVI ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
963424 126

ATT ...

ILL ...

Ribo-seq
ATT 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC, E14
721090 93

ATG ...

MSL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1159021 36

TTG ...

LLS ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
410215 132

TTG ...

LPQ ...

Ribo-seq
TTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, R1E, v6-5
1204105 51

ATA ...

IIT ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
491993 60

GTG ...

VTI ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Spleen_B_cell
1363575 45

TTG ...

LCC ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, NSC
1158751 30

CTG ...

LQR ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
MEF, NSC, v6-5
409498 105

CTG ...

LMF ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, NSC, v6-5
491181 45

ATG ...

MNF ...

Ribo-seq
ATG 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, Spleen_B_cell
404546 63

TTG ...

LYN ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
NSC, v6-5
403136 138

GTG ...

VSM ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
R1E
1204582 99

ATC ...

INM ...

Ribo-seq
ATC 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1201693 42

AAG ...

KRL ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1159406 33

CTG ...

LSI ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
409924 102

ATG ...

MFM ...

Ribo-seq
ATG 7 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, NSC, v6-5
1363214 105

CTG ...

LLH ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1203212 54

ATC ...

IYL ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1201305 63

ATA ...

IFK ...

Ribo-seq
ATA weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1636288 60

ATG ...

MPR ...

Ribo-seq
ATG 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC
1362904 108

GTG ...

VLL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1205252 60

AAG ...

KCS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
718903 63

TTG ...

LKD ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
724168 51

ATG ...

MVV ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1204096 66

AAG ...

KRV ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1201026 141

CTG ...

LQP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1633064 33

TTG ...

LQL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
1363027 81

GTG ...

VST ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF
1203983 45

AAG ...

KCS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
405943 36

CTG ...

LYC ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, NSC
1200784 36

AGG ...

RTN ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
410467 96

ATG ...

MKQ ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, R1E
720021 45

ATG ...

MRL ...

Ribo-seq
ATG weak 5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
NSC, v6-5
804565 48

ATG ...

MDT ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, MEF, NSC,
v6-5
1158553 33

ATG ...

MSM ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
1204373 219

ATG ...

MSL ...

Ribo-seq
ATG 3 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, NSC
1201385 87

ATC ...

ILL ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
724984 162

ATG ...

MKY ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, NSC
1007098 30

CTG ...

LPP ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14
1159631 78

GTG ...

VQM ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
722073 87

CTG ...

LTC ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
721753 36

CTG ...

LMS ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
406638 30

TTG ...

LCF ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, MEF
724954 174

ATG ...

MSN ...

Ribo-seq
ATG 7 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
R1E, v6-5
723393 153

GTG ...

VLQ ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
14475 39

GTG ...

VGK ...

Ribo-seq
GTG strong 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF, R1E
1364548 45

GTG ...

VCQ ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, NSC
404657 168

CTG ...

LRE ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1869669 48

ATG ...

MEL ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
405735 57

ATG ...

MPR ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, R1E,
v6-5
1363646 69

ATG ...

MSN ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
410991 81

ATG ...

MGL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Glioma, Liver, MEF,
MESC, R1E, v6-5
1363447 102

CTG ...

LHL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
409404 120

CTG ...

LRT ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
1202683 189

CTG ...

LRR ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
722573 144

ATG ...

MRV ...

Ribo-seq
ATG moderate 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC
727033 72

ATG ...

MST ...

Ribo-seq
ATG 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
NSC
1205496 93

AAG ...

KQR ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1202777 42

CTG ...

LIL ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
722146 81

ATG ...

MQW ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
E14, Glioma, Liver,
MEF, MESC, NSC,
v6-5
1204868 54

ATA ...

IRK ...

Ribo-seq
ATA 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1500800 180

CTG ...

LQQ ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
1201962 78

AAG ...

KME ...

Ribo-seq
AAG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1159106 33

CTG ...

LRT ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
724577 36

TTG ...

LES ...

Ribo-seq
TTG strong 6 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, MEF, Neutrophil,
R1E, v6-5
1160780 48

CTG ...

LNM ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1158443 30

ATG ...

MPA ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
1201915 39

ATG ...

MQL ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1201998 87

AGG ...

RSV ...

Ribo-seq
AGG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
718598 33

CTG ...

LNM ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
1363742 69

GTG ...

VNC ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
727019 96

GTG ...

VLL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
724601 48

ATG ...

MRQ ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
1635516 51

ATG ...

MIK ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF
727234 150

GTG ...

VAC ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
720697 135

ATG ...

MVQ ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC
1201950 108

AAG ...

KQS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1363881 66

TTG ...

LDR ...

Ribo-seq
TTG strong 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, R1E
803966 60

ATG ...

MHV ...

Ribo-seq
ATG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
NSC, v6-5
402957 48

CTG ...

LSQ ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Neutrophil
402339 132

ATG ...

MPR ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, R1E
718500 45

CTG ...

LCE ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, MEF, v6-5
1201316 36

ATC ...

IWQ ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
726152 90

CTG ...

LHL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, MEF
1869647 45

CTG ...

LML ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
R1E
1201971 33

AGG ...

RCY ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
720705 99

TTG ...

LNI ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC, v6-5
727023 93

ATG ...

MCM ...

Ribo-seq
ATG 5 sORFs_org_Mouse
Johnstone2016
    InCDS
    Overlapping
    sORF
3T3, E14, Glioma,
Liver, MEF, MESC,
v6-5
1203718 51

AGG ...

RTK ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
727169 60

ATG ...

MQV ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC
1363661 60

ATG ...

MKL ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
410917 87

ATG ...

MEL ...

Ribo-seq
ATG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
NSC, v6-5
403924 81

ATG ...

MLW ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain, E14, MEF,
R1E
727078 141

TTG ...

LSQ ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, R1E,
v6-5
409631 123

TTG ...

LLR ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
v6-5
1158066 57

ATG ...

MMG ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
1007222 48

CTG ...

LWS ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, E14, MEF
1501036 213

CTG ...

LTC ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
722093 87

ATG ...

MNL ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
Glioma, Liver, MEF,
MESC, R1E
1158612 75

ATG ...

MEI ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
1203158 48

ATC ...

IWY ...

Ribo-seq
ATC moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14
1365537 51

ATG ...

MAE ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1204334 99

ATA ...

ILL ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1157668 84

TTG ...

LLK ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, v6-5
401163 54

ATG ...

MEL ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Brain, Neutrophil
723554 90

CTG ...

LFR ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
v6-5
1204728 48

AGG ...

RCY ...

Ribo-seq
AGG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1200826 69

ATA ...

IQI ...

Ribo-seq
ATA moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
805216 75

TTG ...

LYL ...

Ribo-seq
TTG moderate 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
B_cell, E14, MEF,
NSC, v6-5
727548 141

TTG ...

LEL ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
1157462 60

GTG ...

VMM ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
1202273 72

ATC ...

IQP ...

Ribo-seq
ATC weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
1499582 48

GTG ...

VTI ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
1202271 54

AAG ...

KDS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14
410402 111

ATG ...

MEL ...

Ribo-seq
ATG 8 sORFs_org_Mouse
Johnstone2016
    Alternative
    InCDS
    Overlapping
    sORF
3T3, B_cell, Brain,
E14, Glioma, Liver,
MEF, MESC, NSC,
v6-5
721980 111

TTG ...

LPQ ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
B_cell, E14

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5