Transcript 91995 | MetamORF

Transcript

ID CARD

MetamORF ID

91995

ENSMUST00000156550

Name

Syvn1-207

Strand

Biotype

protein_coding

Start-end positions

6046662-6053709

CDS Start-stop positions

6047934-6052657

CDS Relative positions

Sequences

Transcript sequence

GTC ...

Genome browsers

UCSC

Gene

NCBI:74126

Aliases

1200010C09Rik,
AW211966, C85322, D530017H19Rik,
ENSMUSG00000024807, Hrd1, MGI:1921376,
NCBI:74126, OFF:Syvn1, Syvn1

Chr 19

ORFs

29 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
408384	39	GTG ...	VGL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
406079	33	ATG ...	MSA ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell
402068	30	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	R1E
405968	93	ATG ...	MTS ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
961474	42	ATG ...	MRR ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	sORF Upstream	BMDC, Liver
402170	66	ATG ...	MPP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	B_cell, Spleen_B_cell
401688	39	CTG ...	LHH ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF
961523	33	ATT ...	IGW ...	Ribo-seq	ATT		1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
491296	99	TTG ...	LLT ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, Spleen_B_cell
91994	78	ATG ...	MLP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
409910	126	CTG ...	LGQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
401684	126	CTG ...	LRL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
402811	30	CTG ...	LQR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	B_cell, MEF, R1E
491888	45	CTG ...	LCW ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Spleen_B_cell
402803	36	ATG ...	MPS ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	R1E, Spleen_B_cell
405194	132	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
409960	129	CTG ...	LAL ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
405141	51	CTG ...	LGQ ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell
409138	111	TTG ...	LDG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	Brain
408104	99	ATG ...	MCC ...	Ribo-seq	ATG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, MEF, Spleen_B_cell
489342	75	TTG ...	LWR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	MEF
410376	48	GTG ...	VGL ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E
721651	42	ATG ...	MAR ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	3T3
401393	30	TTG ...	LFG ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
491348	102	GTG ...	VLL ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	Liver, Spleen_B_cell
491491	39	CTG ...	LVS ...	Ribo-seq	CTG		4	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Liver, MEF, Spleen_B_cell
721066	33	TTG ...	LSV ...	Ribo-seq	TTG		1	sORFs_org_Mouse	sORF Upstream	B_cell
491217	69	GTG ...	VIE ...	Ribo-seq	GTG		5	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, Liver, Neutrophil, Spleen_B_cell
92036	39	CTG ...	LCS ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain, R1E

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