Transcript 9192 | MetamORF

Transcript

ID CARD

MetamORF ID

9192

ENSMUST00000154151

Name

Acly-205

Strand

Biotype

processed_transcript

Start-end positions

100477226-100479511

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TTT ...

Genome browsers

UCSC

Gene

NCBI:104112

Aliases

A730098H14Rik,
Acly, AW538652, ENSMUSG00000020917,
MGI:103251, NCBI:104112, OFF:Acly

Chr 11

ORFs

26 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
299360	39	GTG ...	VDM ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
1293727	255	AAG ...	KPN ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
308998	72	CTG ...	LNV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
933396	78	AAG ...	KRL ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
937151	114	AGG ...	RSM ...	Ribo-seq	AGG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
308209	72	CTG ...	LKQ ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
1528692	180	GTG ...	VQI ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
9293	234	GTG ...	VDG ...	Ribo-seq	GTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis
932758	39	ATG ...	MPW ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
307892	48	CTG ...	LMN ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
300946	45	ATG ...	MNM ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
9316	207	GTG ...	VDM ...	Ribo-seq	GTG		12	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis
938078	222	ATC ...	IGV ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
934372	174	ATC ...	ILK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
937086	147	ATT ...	IGA ...	Ribo-seq	ATT		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
930787	75	ATC ...	ILN ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
9191	240	CTG ...	LNV ...	Ribo-seq	CTG		11	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, Liver, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis
9326	123	GTG ...	VLG ...	Ribo-seq	GTG		10	sORFs_org_Mouse	ncRNA sORF	3T3, BMDC, Brain, E14, Liver, MEF, Neutrophil, Skin_tumor, Spleen_B_cell, Testis
1295355	129	ATC ...	IFV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
304473	60	CTG ...	LYR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
308661	66	GTG ...	VDG ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
930999	36	ATT ...	ISY ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1293639	99	ATT ...	IGH ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	E14
312312	36	TTG ...	LTL ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Brain
937826	243	ATC ...	ILN ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
936046	54	ATC ...	IGV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC

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