Transcript 9187 | MetamORF

Transcript

ID CARD

MetamORF ID

9187

ENSMUST00000040430

Name

Vat1-201

Strand

Biotype

protein_coding

Start-end positions

101458745-101466230

CDS Start-stop positions

101460193-101466133

CDS Relative positions

Sequences

Transcript sequence

TGG ...

Genome browsers

UCSC

Gene

NCBI:26949

Aliases

ENSMUSG00000034993,
MGI:1349450, NCBI:26949, OFF:Vat1,
VAT-1, Vat1

Chr 11

ORFs

50 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
639826	33	CTG ...	LYS ...	Ribo-seq	CTG	moderate	7	sORFs_org_Mouse	sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil
647766	51	GTG ...	VAG ...	Ribo-seq	GTG	strong	9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, v6-5
294447	108	GTG ...	VPH ...	Ribo-seq	GTG	moderate	13	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC, R1E, v6-5
639772	192	CTG ...	LWQ ...	Ribo-seq	CTG	weak	5	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14
294214	63	CTG ...	LLP ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, v6-5
1295340	84	AGG ...	RRT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
656742	57	CTG ...	LQV ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF
644628	75	GTG ...	VDQ ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E
654072	99	CTG ...	LTR ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, Neutrophil
650132	36	CTG ...	LPG ...	Ribo-seq	CTG	moderate	4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14
938121	99	ATA ...	IAW ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
1295132	33	ACG ...	TRS ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
293417	105	GTG ...	VES ...	Ribo-seq	GTG	moderate	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, v6-5
653428	204	CTG ...	LRR ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14
315457	150	CTG ...	LCV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E
642122	132	CTG ...	LWA ...	Ribo-seq	CTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF
316413	144	GTG ...	VAS ...	Ribo-seq	GTG		10	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E
21964	72	TTG ...	LKK ...	Ribo-seq	TTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Testis, v6-5
21393	60	CTG ...	LPC ...	Ribo-seq	CTG	weak	11	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, Testis, v6-5
301661	132	GTG ...	VAS ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E
934343	201	AGG ...	RRP ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
1293136	162	AGG ...	RPT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
305052	108	ATG ...	MER ...	Ribo-seq	ATG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E
315702	45	CTG ...	LTM ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, NSC
639698	30	TTG ...	LTQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, Brain
930951	66	AAG ...	KGC ...	Ribo-seq	AAG	optimal	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
934613	30	AGG ...	RQS ...	Ribo-seq	AGG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
313115	120	ATG ...	MER ...	Ribo-seq	ATG		11	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Neutrophil, R1E
937486	78	ATA ...	IAS ...	Ribo-seq	ATA		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
644770	51	GTG ...	VAW ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, MEF
1285665	63	ATC ...	IRH ...	Ribo-seq	ATC		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
660151	132	GTG ...	VGI ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14
1292333	150	AGG ...	RPT ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
651396	138	GTG ...	VRL ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, E14
292734	108	CTG ...	LVE ...	Ribo-seq	CTG	moderate	13	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, NSC, R1E, v6-5
936261	66	AAG ...	KLL ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
934588	210	AAG ...	KQL ...	Ribo-seq	AAG	moderate	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
640882	99	GTG ...	VGS ...	Ribo-seq	GTG	moderate	7	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil
658592	39	ATG ...	MWT ...	Ribo-seq	ATG		5	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, BMDC, E14, Glioma, Liver, MEF, MESC, NSC
933944	42	ATA ...	ISP ...	Ribo-seq	ATA	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, E14
9186	117	TTG ...	LSL ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Skin_tumor, v6-5
23185	42	TTG ...	LTQ ...	Ribo-seq	TTG		8	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Neutrophil, NSC, R1E, Testis
306082	138	CTG ...	LCV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, Neutrophil, R1E
317013	81	GTG ...	VDQ ...	Ribo-seq	GTG		9	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, BMDC, Brain, E14, Neutrophil, R1E
1288262	198	AGG ...	RWG ...	Ribo-seq	AGG		1	sORFs_org_Mouse	InCDS Overlapping sORF	E14
933468	87	AGG ...	RGS ...	Ribo-seq	AGG	strong	2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
293007	51	GTG ...	VWL ...	Ribo-seq	GTG	weak	12	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, BMDC, Brain, E14, MEF, R1E, v6-5
931565	87	ATA ...	IAW ...	Ribo-seq	ATA		2	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
652663	36	TTG ...	LER ...	Ribo-seq	TTG	moderate	6	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, BMDC, E14, MEF, R1E
646528	72	GTG ...	VHR ...	Ribo-seq	GTG	moderate	9	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	3T3, B_cell, BMDC, E14, MEF, Neutrophil

Export data