Transcript 917354

Transcript

ID CARD

MetamORF ID

917354

ENSMUST00000169749

Name

Lpl-204

Strand

Biotype

processed_transcript

Start-end positions

68890744-68895819

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CTT ...

Genome browsers

UCSC

Gene

NCBI:16956

Aliases

ENSMUSG00000015568,
Lpl, MGI:96820, NCBI:16956,
OFF:Lpl

Chr 8

ORFs

36 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
919984	96	AAG ...	KLV ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
245728	60	CTG ...	LAT ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC
1476444	90	GTG ...	VGN ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
242915	33	CTG ...	LVE ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1477673	141	TTG ...	LYR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
611111	48	TTG ...	LWP ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
919754	54	AGG ...	RVQ ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	ncRNA sORF	BMDC
249754	33	ATG ...	MWP ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC
1476556	144	CTG ...	LMQ ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1477018	45	TTG ...	LGA ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	BMDC
920256	57	ATC ...	IPM ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
917497	114	GTG ...	VSA ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	BMDC
238694	195	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
919588	42	AAG ...	KPP ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
249468	48	ATG ...	MQK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	ncRNA sORF	BMDC
917357	123	ATT ...	IGI ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
920221	36	AAG ...	KYW ...	Ribo-seq	AAG	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
1477235	141	ATG ...	MQG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
918881	60	ATT ...	IYQ ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
239238	186	CTG ...	LYK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1477686	123	CTG ...	LQT ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1476414	33	TTG ...	LPH ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
246629	207	GTG ...	VPK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
605304	63	ATG ...	MSY ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC
242900	54	TTG ...	LSM ...	Ribo-seq	TTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
917786	117	ATC ...	IQK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
1476788	93	CTG ...	LVG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
246464	36	ATG ...	MMW ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
918401	72	ATC ...	IQL ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	ncRNA sORF	BMDC
606075	69	ATG ...	MLT ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
918434	75	ATT ...	IIQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
919150	90	ATC ...	IGP ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	BMDC
603351	66	CTG ...	LVV ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	ncRNA sORF	BMDC
247841	66	CTG ...	LGL ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain
918116	57	ATT ...	IHQ ...	Ribo-seq	ATT		1	sORFs_org_Mouse	ncRNA sORF	BMDC
604715	69	ATG ...	MRV ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	ncRNA sORF	BMDC

Export data