Transcript 91546 | MetamORF

Transcript

ID CARD

MetamORF ID

91546

ENSMUST00000018569

Name

Dhx40-201

Strand

Biotype

protein_coding

Start-end positions

86768846-86807746

CDS Start-stop positions

86770122-86807549

CDS Relative positions

Sequences

Transcript sequence

GCC ...

Genome browsers

UCSC

Gene

NCBI:67487

Aliases

2410016C14Rik,
ARG147, DDX40, Dhx40,
ENSMUSG00000018425, MGI:1914737, NCBI:67487,
OFF:Dhx40, PAD

Chr 11

ORFs

37 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1123318	36	TTG ...	LRA ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1126944	81	GTG ...	VRA ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
654820	96	CTG ...	LTE ...	Ribo-seq	CTG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell, E14
312687	42	TTG ...	LMI ...	Ribo-seq	TTG		3	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, B_cell, Brain
1284409	72	AAG ...	KKK ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
1595952	36	CTG ...	LHF ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1121639	33	ATG ...	MGE ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, NSC, v6-5
1127401	69	TTG ...	LEI ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
644895	45	TTG ...	LRE ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3
1290489	51	ATT ...	ISY ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
656428	108	CTG ...	LFA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, B_cell
656292	63	GTG ...	VVK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	InCDS Overlapping sORF	3T3
1123722	105	GTG ...	VKH ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
1130542	114	CTG ...	LWK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
1126687	90	ATG ...	MDV ...	Ribo-seq	ATG	moderate	1	Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC
777130	30	ATG ...	MKQ ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
1284533	87	AAG ...	KAL ...	Ribo-seq	AAG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
775192	141	GTG ...	VDV ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell, E14
1127943	87	GTG ...	VAV ...	Ribo-seq	GTG	strong	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
296469	63	ATG ...	MHG ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain
295854	30	ATG ...	MNR ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
775842	39	ATG ...	MIA ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	B_cell, Glioma, Liver, MEF, MESC
1129623	102	CTG ...	LLA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	v6-5
450493	36	CTG ...	LSF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Spleen_B_cell
1598233	30	CTG ...	LED ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
300169	36	ATG ...	MQE ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	Brain, E14, Glioma, Liver, MEF, MESC
1696142	33	ATG ...	MLL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF
1127995	51	TTG ...	LIY ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
771220	135	GTG ...	VFA ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative Overlapping sORF Upstream	B_cell
1127873	78	CTG ...	LHS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	MEF, v6-5
91545	123	ATG ...	MHI ...	Ribo-seq	ATG	moderate	6	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	BMDC, Brain, E14, Glioma, Liver, MEF, MESC, Testis
297489	81	ATG ...	MTN ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	3T3, Brain, R1E
1130531	72	ATG ...	MRD ...	Ribo-seq	ATG		2	sORFs_org_Mouse Johnstone2016	InCDS Overlapping sORF	Glioma, Liver, MEF, MESC, v6-5
1292238	75	ATG ...	MKY ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
652526	84	ATG ...	MMT ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse Johnstone2016	Alternative InCDS Overlapping sORF	3T3, Glioma, Liver, MEF, MESC, R1E, v6-5
1292673	33	ATC ...	IHI ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
656464	78	CTG ...	LEI ...	Ribo-seq	CTG		2	sORFs_org_Mouse	InCDS Overlapping sORF	3T3, R1E

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