Transcript 90965 | MetamORF

Transcript

ID CARD

MetamORF ID

90965

ENSMUST00000144396

Name

Patz1-210

Strand

Biotype

processed_transcript

Start-end positions

3289202-3295089

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAG ...

Genome browsers

UCSC

Gene

NCBI:56218

Aliases

8430401L15Rik,
AI447519, ENSMUSG00000020453, Mazr,
MGI:1891832, NCBI:56218, OFF:Patz1,
Patz, Patz1, Zfp278

Chr 11

ORFs

25 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1286844	69	AGG ...	RSH ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
18025	108	CTG ...	LRF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1285404	222	AGG ...	RKQ ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	E14
1286482	234	ATC ...	IFL ...	Ribo-seq	ATC		1	sORFs_org_Mouse	ncRNA sORF	E14
1288509	141	CTG ...	LLM ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1290826	279	ATG ...	MRP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1288558	180	ATG ...	MAP ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1292624	66	ACG ...	TSR ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
1287626	48	ATA ...	ISS ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1838399	285	CTG ...	LGE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1286430	150	ATG ...	MVV ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
18627	51	GTG ...	VGK ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
294280	54	ATG ...	MDI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1285520	135	CTG ...	LAV ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1291270	267	CTG ...	LPK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1288982	261	AAG ...	KGR ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
1285699	90	ATA ...	ISF ...	Ribo-seq	ATA		1	sORFs_org_Mouse	ncRNA sORF	E14
1285600	45	ACG ...	TTL ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	E14
1290007	117	TTG ...	LNG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1285645	57	GTG ...	VWS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1295504	186	ATG ...	MDI ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	E14
1288770	243	CTG ...	LAG ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1285776	201	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
1286069	213	GTG ...	VRM ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	E14
90964	30	ATG ...	MWG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Testis

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