Transcript 905343

Transcript

ID CARD

MetamORF ID

905343

ENSMUST00000145106

Name

Rfc3-206

Strand

Biotype

retained_intron

Start-end positions

151642824-151651202

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AAA ...

Genome browsers

UCSC

Gene

NCBI:69263

Aliases

2810416I22Rik,
38kDa, AU022547, ENSMUSG00000033970,
MGI:1916513, NCBI:69263, OFF:Rfc3,
Recc3, Rfc3

Chr 5

ORFs

30 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
518299	78	GTG ...	VRL ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Intronic sORF	v6-5
62096	225	TTG ...	LTE ...	Ribo-seq	TTG		3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
564309	87	ATG ...	MLS ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
1088101	66	TTG ...	LQC ...	Ribo-seq	TTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
62137	72	CTG ...	LAE ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, Liver, R1E
1312407	48	TTG ...	LKP ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1310968	30	GTG ...	VCL ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Intronic sORF	E14
1062664	84	TTG ...	LAR ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, Liver, R1E
1311288	36	ATG ...	MPK ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, R1E
516595	69	GTG ...	VLE ...	Ribo-seq	GTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
521129	51	CTG ...	LGG ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
1087055	45	CTG ...	LQE ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
1310695	69	TTG ...	LCF ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	E14
522052	81	ATG ...	MDH ...	Ribo-seq	ATG	moderate	4	sORFs_org_Mouse	Intronic sORF	BMDC, E14, R1E, v6-5
519952	81	GTG ...	VWR ...	Ribo-seq	GTG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
64422	156	GTG ...	VQC ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
521390	72	CTG ...	LWS ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
519881	45	CTG ...	LRI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	R1E
1382936	87	CTG ...	LLI ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
65493	216	GTG ...	VDK ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
519605	66	CTG ...	LEK ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
564106	30	GTG ...	VMR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	R1E, v6-5
518045	81	CTG ...	LVR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, v6-5
522397	51	CTG ...	LRE ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
519031	54	GTG ...	VEK ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	MEF, R1E
517687	57	GTG ...	VYL ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	E14, v6-5
63558	102	CTG ...	LAL ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	Intronic sORF	E14, Liver, R1E
517975	54	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	E14
1087968	78	ATG ...	MPY ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	Intronic sORF	E14, R1E, v6-5
522786	33	GTG ...	VNF ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	R1E, v6-5

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