Transcript 905325

Transcript

ID CARD

MetamORF ID

905325

ENSMUST00000121339

Name

Mrps17-206

Strand

Biotype

protein_coding

Start-end positions

129715511-129718875

CDS Start-stop positions

129716744-129718155

CDS Relative positions

Sequences

Transcript sequence

TGC ...

Genome browsers

UCSC

Gene

NCBI:66258

Aliases

1810006P02Rik,
ENSMUSG00000034211, MGI:1913508, Mprs17,
Mrps17, NCBI:66258, OFF:Mrps17

Chr 5

ORFs

18 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
518485	42	CTG ...	LVT ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
1234569	144	CTG ...	LCR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1238848	138	AGG ...	RNC ...	Ribo-seq	AGG	weak	1	sORFs_org_Mouse	Alternative Downstream Overlapping sORF	E14
1236794	33	AAG ...	KCC ...	Ribo-seq	AAG	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
62061	75	CTG ...	LRS ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
172833	75	ATG ...	MPF ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC, E14
522243	114	CTG ...	LRQ ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
168714	48	CTG ...	LAH ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	sORF Upstream	BMDC, E14
414479	99	ATC ...	INT ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	sORF Upstream	E14
66406	84	ATG ...	MLR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
179920	84	TTG ...	LLT ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	InCDS Overlapping sORF	BMDC
524149	75	GTG ...	VDS ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative sORF Upstream	BMDC
1237782	36	ATG ...	MVT ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
520401	87	GTG ...	VAS ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
172996	48	ATG ...	MGC ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	E14
414634	30	TTG ...	LSA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14
62128	36	ATG ...	MLR ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Alternative sORF Upstream	E14
522614	33	GTG ...	VSP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Alternative sORF Upstream	E14

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