Transcript 90055 | MetamORF

Transcript

ID CARD

MetamORF ID

90055

ENSMUST00000150328

Name

Dazap1-205

Strand

Biotype

processed_transcript

Start-end positions

80265124-80278376

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GGC ...

Genome browsers

UCSC

Gene

NCBI:70248

Aliases

2410042M16Rik,
Dazap1, ENSMUSG00000069565, MGI:1917498,
mPrrp, NCBI:70248, OFF:Dazap1

Chr 10

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
839290	138	CTG ...	LTP ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
594604	63	TTG ...	LSS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	3T3
755267	165	CTG ...	LWG ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
566002	60	TTG ...	LCG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	3T3
827311	66	CTG ...	LSL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
842058	156	GTG ...	VIP ...	Ribo-seq	GTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain
1579320	60	TTG ...	LWA ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
90054	63	GTG ...	VVT ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Testis
608073	69	TTG ...	LDL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	ncRNA sORF	3T3
1283068	135	AAG ...	KIF ...	Ribo-seq	AAG		1	sORFs_org_Mouse	ncRNA sORF	E14
277538	72	TTG ...	LSG ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain
183388	51	GTG ...	VVM ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	ncRNA sORF	Brain
834287	72	CTG ...	LTL ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, Brain, MEF
1567449	177	GTG ...	VVA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	Brain
82710	66	GTG ...	VHT ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, Brain

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