Transcript 8990 | MetamORF

Transcript

ID CARD

MetamORF ID

8990

ENSMUST00000133426

Name

Ddx5-208

Strand

Biotype

nonsense_mediated_decay

Start-end positions

106781548-106788494

CDS Start-stop positions

106783954-106788316

CDS Relative positions

Sequences

Transcript sequence

ACC ...

Genome browsers

UCSC

Gene

NCBI:13207

Aliases

2600009A06Rik,
Ddx5, ENSMUSG00000020719, G17P1,
Hlr1, HUMP68, MGI:105037,
NCBI:13207, OFF:Ddx5, p68

Chr 11

ORFs

32 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
933400	57	ATC ...	IGP ...	Ribo-seq	ATC	moderate	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
8903	30	CTG ...	LLN ...	Ribo-seq	CTG	weak	8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
975301	75	ATA ...	ISC ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Downstream NMD sORF	MEF
90669	183	GTG ...	VEI ...	Ribo-seq	GTG		2	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Neutrophil
20461	120	CTG ...	LRR ...	Ribo-seq	CTG		5	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC, MEF, Neutrophil, NSC, Testis
934060	36	ATT ...	IGY ...	Ribo-seq	ATT	strong	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
91089	75	CTG ...	LEL ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, Testis, v6-5
931131	111	ATT ...	IQT ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Downstream NMD Overlapping sORF	BMDC
20128	102	GTG ...	VAA ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
933813	42	AGG ...	RHM ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
21660	39	CTG ...	LIA ...	Ribo-seq	CTG	moderate	9	sORFs_org_Mouse	CDS NMD sORF	BMDC, E14, Liver, MEF, Neutrophil, NSC, Testis, v6-5
18084	288	CTG ...	LLK ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Alternative Downstream NMD sORF	Brain, Testis
1037036	45	ATG ...	MKL ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
20648	30	TTG ...	LLP ...	Ribo-seq	TTG	weak	8	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Liver, MEF, Neutrophil, NSC, Testis, v6-5
303762	39	CTG ...	LNF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, Liver
19714	69	CTG ...	LSA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, Testis
8989	39	GTG ...	VDV ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	MEF, Skin_tumor
22190	57	CTG ...	LLA ...	Ribo-seq	CTG	moderate	6	sORFs_org_Mouse	Downstream NMD sORF	BMDC, E14, MEF, Neutrophil, NSC, Testis
931250	30	AGG ...	RHS ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC
936066	36	ATT ...	IAT ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	CDS NMD sORF	BMDC
930948	81	ATA ...	ICI ...	Ribo-seq	ATA	moderate	1	sORFs_org_Mouse	Downstream NMD sORF	BMDC
91331	54	TTG ...	LSL ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil, Testis
994958	111	GTG ...	VQQ ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
22062	66	TTG ...	LEE ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Downstream NMD sORF	E14, NSC, Testis
19554	108	CTG ...	LKD ...	Ribo-seq	CTG		6	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	BMDC, E14, MEF, Neutrophil, NSC, Testis
1036205	48	TTG ...	LMK ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	Neutrophil
17303	153	CTG ...	LID ...	Ribo-seq	CTG		3	sORFs_org_Mouse	InCDS NMD Overlapping sORF	MEF, Neutrophil, Testis
931998	51	ATA ...	IRK ...	Ribo-seq	ATA		1	sORFs_org_Mouse	InCDS NMD Overlapping sORF	BMDC
453440	36	ATG ...	MHI ...	Ribo-seq	ATG	weak	5	sORFs_org_Mouse	Alternative Downstream NMD sORF	BMDC, Brain, E14, Neutrophil
932111	42	ATT ...	ILI ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	CDS NMD sORF	BMDC
930328	63	ATT ...	ISI ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative NMD sORF Upstream	BMDC
308137	45	GTG ...	VWE ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Alternative InCDS NMD Overlapping sORF	E14, MEF, Neutrophil, NSC

Export data