Transcript 897909

Transcript

ID CARD

MetamORF ID

897909

ENSMUST00000124548

Name

Acot7-204

Strand

Biotype

processed_transcript

Start-end positions

152185765-152217796

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGA ...

Genome browsers

UCSC

Gene

NCBI:70025

Aliases

2410041A17Rik,
Ach1, Acot7, Act,
Bach, Cte-II, CTE-IIa,
ENSMUSG00000028937, Lach1, MGI:1917275,
NCBI:70025, OFF:Acot7

Chr 4

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
155969	42	ATG ...	MPM ...	Ribo-seq	ATG	moderate	3	sORFs_org_Mouse	ncRNA sORF	MEF
897908	42	ATC ...	IFC ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
147698	45	ATG ...	MMP ...	Ribo-seq	ATG	weak	4	sORFs_org_Mouse	ncRNA sORF	MEF, NSC
1553940	54	CTG ...	LVF ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
898533	48	ATG ...	MRI ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
1782648	144	GTG ...	VGR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
1656930	96	TTG ...	LKR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
548912	30	CTG ...	LAM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	ncRNA sORF	MEF
1657336	84	ATG ...	MSL ...	Ribo-seq	ATG		2	sORFs_org_Mouse	ncRNA sORF	MEF
549887	36	ATG ...	MWL ...	Ribo-seq	ATG	weak	3	sORFs_org_Mouse	ncRNA sORF	MEF
1783721	75	TTG ...	LAG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	MEF
58857	57	TTG ...	LRR ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	Brain, MEF
1555359	36	CTG ...	LCG ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	ncRNA sORF	Brain, MEF

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