Transcript 893225

Transcript

ID CARD

MetamORF ID

893225

ENSMUST00000196097

Name

Anxa5-202

Strand

Biotype

retained_intron

Start-end positions

36449164-36452328

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

ATC ...

Genome browsers

UCSC

Gene

NCBI:11747

Aliases

Anx5,
Anxa5, ENSMUSG00000027712, MGI:106008,
NCBI:11747, OFF:Anxa5, R74653

Chr 3

ORFs

15 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
1171868	81	ATG ...	MCF ...	Ribo-seq	ATG		6	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, NSC, v6-5
893224	177	GTG ...	VVS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, Neutrophil
1220266	153	CTG ...	LFN ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	E14
52969	69	CTG ...	LGR ...	Ribo-seq	CTG	strong	4	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF
51825	36	CTG ...	LPT ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	E14, MEF, NSC
977047	174	GTG ...	VSR ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, E14, MEF, Neutrophil
895115	60	ACG ...	TIT ...	Ribo-seq	ACG	weak	1	sORFs_org_Mouse	Intronic sORF	BMDC
1014110	33	TTG ...	LEQ ...	Ribo-seq	TTG		7	sORFs_org_Mouse	Intronic sORF	BMDC, Brain, E14, MEF, Neutrophil, NSC
1779377	30	CTG ...	LLL ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1780778	33	CTG ...	LLL ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	MEF
1649761	48	TTG ...	LTE ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
894114	186	ATC ...	IRV ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
893795	168	AGG ...	RSE ...	Ribo-seq	AGG		2	sORFs_org_Mouse	Intronic sORF	BMDC, E14
53266	72	GTG ...	VLG ...	Ribo-seq	GTG	moderate	5	sORFs_org_Mouse	Intronic sORF	BMDC, E14, MEF, v6-5
1219001	204	ACG ...	TDD ...	Ribo-seq	ACG		1	sORFs_org_Mouse	Intronic sORF	E14

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