Transcript 88877 | MetamORF

Transcript

ID CARD

MetamORF ID

88877

ENSMUST00000153386

Name

Maged1-207

Strand

Biotype

retained_intron

Start-end positions

94535476-94541990

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

GAG ...

Genome browsers

UCSC

Gene

NCBI:94275

Aliases

2810433C11Rik,
5430405L04Rik, Dlixin, Dlxin-1,
Dlxin1, DXBwg1492e, ENSMUSG00000025151,
MAGE-D1, Maged1, MGI:1930187,
NCBI:94275, NRAGE, OFF:Maged1

Chr X

ORFs

42 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
89471	195	CTG ...	LTW ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
281796	42	CTG ...	LVP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
284040	168	GTG ...	VTG ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
628911	267	TTG ...	LSG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, NSC
628493	213	CTG ...	LDG ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
88876	198	CTG ...	LLT ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
89416	168	CTG ...	LEH ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	Testis
276871	159	CTG ...	LHS ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
279484	108	CTG ...	LQL ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
88975	33	CTG ...	LDC ...	Ribo-seq	CTG	moderate	3	sORFs_org_Mouse	Intronic sORF	MEF
88803	42	CTG ...	LRK ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1798632	45	TTG ...	LAE ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Intronic sORF	MEF
88892	237	GTG ...	VSG ...	Ribo-seq	GTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF, Testis
1034175	90	CTG ...	LAW ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
282268	114	ATG ...	MLL ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
89024	54	CTG ...	LYI ...	Ribo-seq	CTG	weak	3	sORFs_org_Mouse	Intronic sORF	MEF, Testis
1526005	108	CTG ...	LAK ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	NSC
277272	123	ATG ...	MLW ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
281060	84	CTG ...	LKR ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
632992	258	CTG ...	LAQ ...	Ribo-seq	CTG	strong	2	sORFs_org_Mouse	Intronic sORF	3T3, NSC
277987	141	CTG ...	LQM ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
1117164	93	CTG ...	LRD ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1119787	123	CTG ...	LTG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
275646	102	CTG ...	LRQ ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
1526405	54	TTG ...	LAE ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
89404	81	CTG ...	LKE ...	Ribo-seq	CTG	weak	4	sORFs_org_Mouse	Intronic sORF	MEF, NSC, Testis
283025	135	ATG ...	MKP ...	Ribo-seq	ATG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
1334548	33	CTG ...	LDP ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
632800	249	TTG ...	LSG ...	Ribo-seq	TTG	weak	2	sORFs_org_Mouse	Intronic sORF	3T3, NSC
1119187	69	CTG ...	LTG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
278108	48	TTG ...	LSR ...	Ribo-seq	TTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
1116758	33	TTG ...	LSA ...	Ribo-seq	TTG		2	sORFs_org_Mouse	Intronic sORF	MEF
1526085	72	CTG ...	LAK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Intronic sORF	NSC
1118906	36	CTG ...	LTG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	MEF
278661	48	CTG ...	LCL ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
280423	111	CTG ...	LLQ ...	Ribo-seq	CTG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
278898	54	ATG ...	MRL ...	Ribo-seq	ATG	moderate	2	sORFs_org_Mouse	Intronic sORF	MEF
278786	60	TTG ...	LEM ...	Ribo-seq	TTG	strong	2	sORFs_org_Mouse	Intronic sORF	MEF
278257	105	CTG ...	LTG ...	Ribo-seq	CTG	weak	2	sORFs_org_Mouse	Intronic sORF	MEF
280159	69	TTG ...	LPG ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Intronic sORF	MEF
1526287	126	CTG ...	LAE ...	Ribo-seq	CTG	strong	1	sORFs_org_Mouse	Intronic sORF	NSC
283988	75	CTG ...	LLL ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Intronic sORF	Liver

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