Transcript 8878 | MetamORF

Metam
ORF

Transcript

Transcript

ID CARD

MetamORF ID

8878

ID

ENSMUST00000179598

Name

Gm38394-201

Strand

-

Biotype

protein_coding

Start-end positions

133619940-133661318

CDS Start-stop positions

133656655-133659597

CDS Relative positions

1722-4664

Sequences

Transcript sequence

CGC ...

Genome browsers

UCSC

Gene

ID

Aliases

Gm38394

Chr 1

ORFs

17 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
504328	57	CTG ...	LSE ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Downstream sORF	Spleen_B_cell
8877	81	TTG ...	LEA ...	Ribo-seq	TTG	strong	3	sORFs_org_Mouse	Downstream sORF	Brain, Liver, Skin_tumor
943406	48	ATC ...	ILG ...	Ribo-seq	ATC	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	BMDC
770214	39	GTG ...	VKT ...	Ribo-seq	GTG	weak	2	sORFs_org_Mouse	Alternative Downstream sORF	Brain, Liver
899077	57	ATT ...	IKA ...	Ribo-seq	ATT	weak	1	sORFs_org_Mouse	Alternative Downstream sORF	BMDC
411312	63	GTG ...	VAA ...	Ribo-seq	GTG	strong	1	sORFs_org_Mouse	sORF Upstream	Liver
702289	36	CTG ...	LWR ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Downstream sORF	3T3
646197	93	ATG ...	MGK ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	sORF Upstream	Liver
1406046	57	GTG ...	VCR ...	Ribo-seq	GTG		1	sORFs_org_Mouse	Alternative Downstream sORF	Liver
488864	63	TTG ...	LEL ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Downstream sORF	Spleen_B_cell
1645666	72	TTG ...	LGI ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative Downstream sORF	MEF
674831	30	ATG ...	MTF ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Alternative Downstream sORF	BMDC
464304	51	CTG ...	LNP ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	sORF Upstream	Liver
645894	105	GTG ...	VRI ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	sORF Upstream	Liver
708503	72	TTG ...	LSQ ...	Ribo-seq	TTG	moderate	2	sORFs_org_Mouse	Downstream sORF	3T3, BMDC
1409818	57	TTG ...	LVL ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	sORF Upstream	Liver
446792	63	TTG ...	LDP ...	Ribo-seq	TTG	strong	1	sORFs_org_Mouse	Downstream sORF	Brain

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