Transcript 885436

Transcript

ID CARD

MetamORF ID

885436

ENSMUST00000177292

Name

Nptn-212

Strand

Biotype

protein_coding

Start-end positions

58582240-58651318

CDS Start-stop positions

58582436-58651318

CDS Relative positions

Sequences

Transcript sequence

ACG ...

Genome browsers

UCSC

Gene

NCBI:20320

Aliases

AW554172,
ENSMUSG00000032336, MGI:108077, NCBI:20320,
Nptn, OFF:Nptn, Sdfr1,
SDR-1

Chr 9

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
921899	261	CTG ...	LAR ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
924791	99	TTG ...	LCM ...	Ribo-seq	TTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
433650	108	GTG ...	VKR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
924806	87	AGG ...	RAG ...	Ribo-seq	AGG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
6390	39	CTG ...	LDK ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
923560	57	TTG ...	LPH ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
439635	129	CTG ...	LPP ...	Ribo-seq	CTG		1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	Brain
921333	54	ATC ...	ITK ...	Ribo-seq	ATC		1	sORFs_org_Mouse	sORF	BMDC
923458	42	ATT ...	ILS ...	Ribo-seq	ATT	moderate	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
922893	87	ATA ...	ISQ ...	Ribo-seq	ATA	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC
254760	33	ATG ...	MPA ...	Ribo-seq	ATG		2	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain
440158	114	ATG ...	MPA ...	Ribo-seq	ATG		3	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC, Brain, Liver
259844	75	CTG ...	LSP ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Alternative InCDS Overlapping sORF	BMDC

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