Transcript 88485 | MetamORF

Transcript

ID CARD

MetamORF ID

88485

ENSMUST00000126440

Name

Pdha1-202

Strand

Biotype

retained_intron

Start-end positions

160129288-160138309

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

AGG ...

Genome browsers

UCSC

Gene

NCBI:18597

Aliases

ENSMUSG00000031299,
MGI:97532, NCBI:18597, OFF:Pdha1,
Pdha-1, Pdha1

Chr X

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
89398	39	GTG ...	VRA ...	Ribo-seq	GTG		9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
275442	33	GTG ...	VVS ...	Ribo-seq	GTG		6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, Brain, R1E, Spleen_B_cell
630679	54	ATG ...	MAS ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
765797	72	CTG ...	LVA ...	Ribo-seq	CTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, Brain
277106	48	TTG ...	LLP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Spleen_B_cell
1572997	126	GTG ...	VRR ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	Brain, R1E
275791	75	GTG ...	VLV ...	Ribo-seq	GTG		4	sORFs_org_Mouse	Intronic sORF	Brain, Spleen_B_cell
927523	48	ATC ...	IPR ...	Ribo-seq	ATC		1	sORFs_org_Mouse	Intronic sORF	BMDC
442088	81	ATG ...	MFL ...	Ribo-seq	ATG		1	sORFs_org_Mouse	Intronic sORF	Spleen_B_cell
89445	120	CTG ...	LEA ...	Ribo-seq	CTG		7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E, Spleen_B_cell, Testis
417942	48	TTG ...	LPL ...	Ribo-seq	TTG		6	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, MEF, Spleen_B_cell
276605	75	TTG ...	LFS ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, Brain, Spleen_B_cell
276353	42	CTG ...	LYP ...	Ribo-seq	CTG		5	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, MEF, Spleen_B_cell
88484	45	CTG ...	LPV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	Intronic sORF	3T3, B_cell, BMDC, MEF, Neutrophil, R1E, Spleen_B_cell, Testis
276887	81	GTG ...	VLK ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	Intronic sORF	3T3
282610	33	TTG ...	LQM ...	Ribo-seq	TTG		4	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, Spleen_B_cell
764989	174	GTG ...	VLT ...	Ribo-seq	GTG		2	sORFs_org_Mouse	Intronic sORF	B_cell, R1E
633688	69	CTG ...	LPI ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	Intronic sORF	3T3
89582	126	GTG ...	VGL ...	Ribo-seq	GTG		7	sORFs_org_Mouse	Intronic sORF	3T3, BMDC, Brain, R1E, Spleen_B_cell, Testis

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