Metam
ORF

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Transcript

Transcript

ID CARD

MetamORF ID

8833

ID

ENSMUST00000047714

Name

Kdm5b-201

Strand

+

Biotype

protein_coding

Start-end positions

134560171-134635285

CDS Start-stop positions

134560339-134631374

CDS Relative positions

-

Sequences

Transcript sequence

GGC ...

Gene

ID

NCBI:75605

Aliases

2010009J12Rik,
2210016I17Rik, AW556288, D1Ertd202e,
ENSMUSG00000042207, Jarid1b, Kdm5b,
MGI:1922855, mKIAA4034, NCBI:75605,
OFF:Kdm5b, PLU-1, Plu1,
PUT1, Rb-Bp2, RBBP2H1A


Chr 1

ORFs

176 ORFs

MetamORF
ORF ID

The MetamORF ID of the ORF. This is an unique ID referring to the ORF.

ORF
lenght

The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.

Nucleic
sequence

The nucleic sequence of the ORF.

Amino acid
sequence

The amino acid sequence of the ORF.

Identification

The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.

Start
codon

The start codon sequence of the ORF.

Kozak context

The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.

Exp. count

The number of original datasets that identifed the ORF on the transcript.

Data sources

The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.

ORF annotations

A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.

Cell types

A comma-separated list of the cell types in which the ORF has already been identified on the transcript.

539583 135

TTG ...

LNK ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
1166737 135

GTG ...

VAS ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
49243 150

CTG ...

LKF ...

Ribo-seq
CTG 6 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
NSC, Testis, v6-5
26579 33

CTG ...

LGS ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Testis
1156609 54

CTG ...

LPS ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
697980 60

ATG ...

MSA ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
v6-5
1098741 48

CTG ...

LVV ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
1499040 108

GTG ...

VSL ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
NSC
27160 87

ATG ...

MLK ...

Ribo-seq
ATG moderate 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
NSC, Testis, v6-5
751662 99

TTG ...

LLQ ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
1132023 132

CTG ...

LAQ ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
347427 33

CTG ...

LRM ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF
651603 93

TTG ...

LLL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1163116 87

CTG ...

LLI ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC, v6-5
743951 153

GTG ...

VGL ...

Ribo-seq
GTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
12829 75

TTG ...

LGA ...

Ribo-seq
TTG strong 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
Skin_tumor, v6-5
539636 99

TTG ...

LEK ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
25253 93

GTG ...

VMT ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Testis,
v6-5
39315 45

CTG ...

LLV ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
Testis
1147774 42

TTG ...

LSQ ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC, v6-5
53805 75

TTG ...

LPS ...

Ribo-seq
TTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
Testis, v6-5
385324 75

CTG ...

LGR ...

Ribo-seq
CTG strong 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
50394 84

GTG ...

VPL ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, Testis,
v6-5
611935 72

ATG ...

MQK ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
720200 141

TTG ...

LFA ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1150013 54

GTG ...

VCG ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
43680 96

CTG ...

LGS ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Testis,
v6-5
692493 51

TTG ...

LNL ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
v6-5
733186 84

ATG ...

MHS ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
1123268 105

ATG ...

MTG ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1173141 36

CTG ...

LEL ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
541815 105

CTG ...

LIL ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
663970 36

TTG ...

LCP ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
93643 42

ATG ...

MSI ...

Ribo-seq
ATG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
345614 30

ATG ...

MQS ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain
666228 69

TTG ...

LNL ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
1131959 33

TTG ...

LPG ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
542888 111

ATG ...

MEL ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
8832 57

TTG ...

LIL ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, Skin_tumor,
v6-5
715269 72

CTG ...

LKF ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
1155801 63

ATG ...

MHG ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC, v6-5
653163 51

CTG ...

LCK ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
688869 36

ATG ...

MGK ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
735390 57

CTG ...

LGR ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
1339073 240

CTG ...

LPR ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
1485895 114

GTG ...

VLV ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
NSC
661943 36

TTG ...

LSC ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
v6-5
1166257 30

GTG ...

VLF ...

Ribo-seq
GTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
25986 90

ATG ...

MTV ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Testis,
v6-5
1362593 231

TTG ...

LRS ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14
752098 48

ATG ...

MKC ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
1162318 90

CTG ...

LGQ ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
691527 96

GTG ...

VSG ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
689350 45

CTG ...

LSS ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14
1153303 30

CTG ...

LAY ...

Ribo-seq
CTG strong 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
49672 96

ATG ...

MQK ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, Testis,
v6-5
657076 138

GTG ...

VEV ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
1490327 60

GTG ...

VPL ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
49681 78

CTG ...

LLP ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
Testis, v6-5
23854 99

CTG ...

LKF ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
Testis, v6-5
1106088 57

GTG ...

VWS ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
41636 42

CTG ...

LTE ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Testis, v6-5
291774 36

ATG ...

MKR ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
1124624 51

ATG ...

MHS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
1172340 102

CTG ...

LLT ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
707899 60

TTG ...

LAV ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
1129815 48

GTG ...

VLL ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC, v6-5
722199 51

CTG ...

LKE ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
v6-5
1145530 60

CTG ...

LEF ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
693686 42

CTG ...

LLW ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
29632 51

CTG ...

LCS ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Testis
697788 81

GTG ...

VWQ ...

Ribo-seq
GTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1169675 69

CTG ...

LFE ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
1135309 66

TTG ...

LEK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
636213 54

GTG ...

VAF ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
37830 111

TTG ...

LVS ...

Ribo-seq
TTG strong 2 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
NSC, Testis
90443 102

CTG ...

LRK ...

Ribo-seq
CTG weak 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
Testis, v6-5
1494082 51

TTG ...

LPS ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
723921 84

CTG ...

LPS ...

Ribo-seq
CTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
v6-5
53392 93

CTG ...

LTE ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Testis, v6-5
1137863 57

CTG ...

LAG ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
552126 36

TTG ...

LQS ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, v6-5
1139612 66

GTG ...

VCW ...

Ribo-seq
GTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC, v6-5
1141011 33

ATG ...

MLH ...

Ribo-seq
ATG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
33300 84

CTG ...

LKL ...

Ribo-seq
CTG moderate 7 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, MEF,
NSC, Testis, v6-5
1156595 39

CTG ...

LSL ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
683338 30

GTG ...

VCL ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
v6-5
1134912 66

ATG ...

MWH ...

Ribo-seq
ATG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC, v6-5
53683 57

ATG ...

MAK ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, MEF, Testis,
v6-5
667142 63

TTG ...

LLQ ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
646228 81

CTG ...

LIL ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
715184 42

ATG ...

MLS ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
v6-5
1167788 78

GTG ...

VAF ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
656825 132

GTG ...

VAM ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
729730 111

TTG ...

LPP ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
536951 300

GTG ...

VEV ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
535951 264

GTG ...

VTA ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
20613 63

CTG ...

LDC ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, Testis,
v6-5
542970 39

CTG ...

LFI ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
645673 111

TTG ...

LKK ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
643229 33

ATG ...

MEF ...

Ribo-seq
ATG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC
645992 39

TTG ...

LSF ...

Ribo-seq
TTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, NSC
20322 150

GTG ...

VMA ...

Ribo-seq
GTG moderate 4 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
E14, NSC, Testis,
v6-5
697706 39

TTG ...

LPS ...

Ribo-seq
TTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
v6-5
429777 30

TTG ...

LHN ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, Liver, Spleen_B_cell,
v6-5
1491151 78

ATG ...

MAS ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
NSC
1124870 45

CTG ...

LLK ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
705902 45

TTG ...

LML ...

Ribo-seq
TTG moderate 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
v6-5
943830 42

ATT ...

IAD ...

Ribo-seq
ATT moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
BMDC
547261 84

TTG ...

LAV ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
678291 42

ATG ...

MDQ ...

Ribo-seq
ATG strong 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
718193 51

ATG ...

MTF ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
1137655 132

CTG ...

LCW ...

Ribo-seq
CTG moderate 3 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14, NSC, v6-5
738611 93

TTG ...

LKT ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, R1E,
v6-5
546075 111

CTG ...

LRQ ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
1210187 177

AAG ...

KEM ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
E14
337426 42

TTG ...

LPM ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Brain
669033 126

ATG ...

MTR ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
399947 30

CTG ...

LVE ...

Ribo-seq
CTG strong 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, MEF,
v6-5
531668 30

CTG ...

LVW ...

Ribo-seq
CTG strong 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC, Spleen_B_cell
1493881 54

CTG ...

LLP ...

Ribo-seq
CTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
NSC
938752 126

AAG ...

KPS ...

Ribo-seq
AAG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
BMDC
739421 213

ATG ...

MTF ...

Ribo-seq
ATG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, NSC,
v6-5
744038 252

ATG ...

MTV ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
740946 51

GTG ...

VRR ...

Ribo-seq
GTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC
537738 39

TTG ...

LSP ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
540081 294

GTG ...

VAM ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
716046 78

CTG ...

LWA ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1127123 156

CTG ...

LQS ...

Ribo-seq
CTG weak 3 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14, NSC, v6-5
1142965 39

ATG ...

MLC ...

Ribo-seq
ATG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
734674 288

ATG ...

MTR ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
537154 102

CTA ...

LWQ ...

Ribo-seq
CTA 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
90041 84

TTG ...

LCK ...

Ribo-seq
TTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, Testis,
v6-5
18941 102

GTG ...

VTA ...

Ribo-seq
GTG 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, Testis,
v6-5
540245 135

TTG ...

LKK ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, v6-5
1140158 45

TTG ...

LPT ...

Ribo-seq
TTG weak 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
1171103 60

ATG ...

MGK ...

Ribo-seq
ATG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
MEF, v6-5
537332 255

GTG ...

VMT ...

Ribo-seq
GTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
15304 54

TTG ...

LPR ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
Skin_tumor
662133 141

GTG ...

VWK ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
1126897 102

ATG ...

MWA ...

Ribo-seq
ATG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
36949 72

ATG ...

MIF ...

Ribo-seq
ATG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, Testis,
v6-5
669948 63

TTG ...

LLQ ...

Ribo-seq
TTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
675652 87

ATG ...

MEL ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
1170404 45

ATG ...

MQN ...

Ribo-seq
ATG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
63020 54

CTG ...

LFS ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Testis, v6-5
546881 141

TTG ...

LVL ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
1167509 111

TTG ...

LPR ...

Ribo-seq
TTG 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, v6-5
749458 72

CTG ...

LIT ...

Ribo-seq
CTG 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, v6-5
1141361 33

TTG ...

LLI ...

Ribo-seq
TTG weak 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
537943 75

TTG ...

LLQ ...

Ribo-seq
TTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
709880 153

ATG ...

MCA ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
1157394 147

GTG ...

VVS ...

Ribo-seq
GTG moderate 3 sORFs_org_Mouse
    Alternative
    Downstream
    Overlapping
    sORF
E14, NSC, v6-5
51499 105

CTG ...

LFS ...

Ribo-seq
CTG 5 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, Brain, E14,
Testis, v6-5
299502 39

CTG ...

LSS ...

Ribo-seq
CTG weak 4 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Brain, NSC,
v6-5
23611 114

GTG ...

VNS ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, Testis
585732 30

CTG ...

LCS ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    sORF
    Upstream
3T3
1153151 78

GTG ...

VAS ...

Ribo-seq
GTG 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
v6-5
1151100 222

CTG ...

LPC ...

Ribo-seq
CTG moderate 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
E14, v6-5
646463 51

GTG ...

VSQ ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC
738282 129

ATG ...

MWA ...

Ribo-seq
ATG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, NSC, v6-5
1137588 54

GTG ...

VYK ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
E14, v6-5
21150 45

GTG ...

VMS ...

Ribo-seq
GTG weak 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, E14, Testis,
v6-5
714077 270

CTG ...

LHG ...

Ribo-seq
CTG weak 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, E14
649453 147

TTG ...

LQL ...

Ribo-seq
TTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
1131704 45

CTG ...

LFE ...

Ribo-seq
CTG 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
E14, NSC, v6-5
540757 72

CTG ...

LCK ...

Ribo-seq
CTG 4 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3, MEF, NSC,
v6-5
1127916 108

TTG ...

LVL ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
25499 147

ATG ...

MAA ...

Ribo-seq
ATG strong 4 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
E14, NSC, Testis,
v6-5
1123231 102

TTG ...

LNK ...

Ribo-seq
TTG 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
v6-5
669201 60

TTG ...

LQE ...

Ribo-seq
TTG weak 3 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3, E14, v6-5
728055 51

ATG ...

MSE ...

Ribo-seq
ATG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
640400 39

CTG ...

LWR ...

Ribo-seq
CTG weak 1 sORFs_org_Mouse
    InCDS
    Overlapping
    sORF
3T3
715382 87

CTG ...

LVK ...

Ribo-seq
CTG moderate 1 sORFs_org_Mouse
    Alternative
    InCDS
    Overlapping
    sORF
3T3
662754 276

GTG ...

VRL ...

Ribo-seq
GTG moderate 2 sORFs_org_Mouse
    Alternative
    Overlapping
    sORF
    Upstream
3T3, E14
18379 69

GTG ...

VCA ...

Ribo-seq
GTG weak 1 sORFs_org_Mouse
    Downstream
    Overlapping
    sORF
Testis

Export data

Identification method

Predicted

Ribo-seq

MS

Kozak context

moderate

weak

strong

optimal

Start Codon

ORF length

ORF Annotations

Reading frame

Alternative

Relative position

CDS

Downstream

InCDS

Intronic

NewCDS

Overlapping

Upstream

Biotype

Intergenic

ncRNA

NMD

NSD

Pseudogene

Length

sORF

Cell types

3T3

B_cell

BMDC

Brain

C2C12

E14

Glioma

Liver

MEF

MESC

Neutrophil

NSC

R1E

Skin_tumor

Spleen_B_cell

Testis

v6-5