Transcript 87991 | MetamORF

Transcript

ID CARD

MetamORF ID

87991

ENSMUST00000159549

Name

Strand

Biotype

processed_transcript

Start-end positions

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

Genome browsers

Gene

NCBI:52696

Aliases

2010007E07Rik,
2600001N01Rik, D10Ertd749e, ENSMUSG00000019923,
MGI:1289227, NCBI:52696, OFF:Zwint,
Zwint, Zwint-1

Chr 10

ORFs

13 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
87990	129	GTG ...	VPC ...	Ribo-seq	GTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, MEF, NSC, Testis
163251	84	CTG ...	LEK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF, R1E
76863	75	CTG ...	LQR ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, R1E
255892	129	CTG ...	LTK ...	Ribo-seq	CTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, R1E
823304	54	CTG ...	LET ...	Ribo-seq	CTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E
828871	45	TTG ...	LKQ ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	B_cell, R1E
929116	51	AGG ...	RAS ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
222815	138	TTG ...	LQN ...	Ribo-seq	TTG		2	sORFs_org_Mouse	ncRNA sORF	MEF, R1E
88317	120	CTG ...	LRP ...	Ribo-seq	CTG		6	sORFs_org_Mouse	ncRNA sORF	Brain, E14, MEF, NSC, Testis
1886916	99	CTG ...	LCS ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
1801250	102	CTG ...	LLC ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	R1E
220482	33	TTG ...	LTD ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	B_cell, MEF, R1E
1882911	42	GTG ...	VKG ...	Ribo-seq	GTG		1	sORFs_org_Mouse	ncRNA sORF	R1E

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