Transcript 864825

Transcript

ID CARD

MetamORF ID

864825

ENSMUST00000162032

Name

Adh1-204

Strand

Biotype

processed_transcript

Start-end positions

138260991-138282781

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

CAC ...

Genome browsers

UCSC

Gene

NCBI:11522

Aliases

Adh-1,
Adh-1-t, Adh-1e, Adh-1t,
Adh-3e, ADH-A2, ADH-AA,
Adh1, Adh1-e, Adh1-t,
Adh1tl, Adh3-e, AI194826,
ENSMUSG00000074207, MGI:87921, NCBI:11522,
OFF:Adh1

Chr 3

ORFs

19 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
865443	63	ATG ...	MGA ...	Ribo-seq	ATG	strong	1	sORFs_org_Mouse	ncRNA sORF	Liver
865465	150	ATG ...	MSF ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
864824	48	CTG ...	LRC ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
866683	36	GTG ...	VEP ...	Ribo-seq	GTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
866489	66	GTG ...	VSA ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
866366	147	ATG ...	MKG ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
865593	84	TTG ...	LAR ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
865731	87	CTG ...	LPA ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
865957	42	ATG ...	MRE ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
864952	39	ATG ...	MQD ...	Ribo-seq	ATG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
865454	69	CTG ...	LVS ...	Ribo-seq	CTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver
865942	81	ATG ...	MQS ...	Ribo-seq	ATG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
864954	135	CTG ...	LCF ...	Ribo-seq	CTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
865777	48	GTG ...	VWR ...	Ribo-seq	GTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
866656	162	TTG ...	LFC ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
866156	111	TTG ...	LVN ...	Ribo-seq	TTG		1	sORFs_org_Mouse	ncRNA sORF	Liver
865810	69	CTG ...	LQG ...	Ribo-seq	CTG	weak	1	sORFs_org_Mouse	ncRNA sORF	Liver
865471	96	ATG ...	MCA ...	Ribo-seq	ATG		1	sORFs_org_Mouse	ncRNA sORF	Liver
865286	30	TTG ...	LQA ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Liver

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