Transcript 8544 | MetamORF

Transcript

ID CARD

MetamORF ID

8544

ENSMUST00000156503

Name

Uqcrq-204

Strand

Biotype

processed_transcript

Start-end positions

53428953-53430831

CDS Start-stop positions

CDS Relative positions

Sequences

Transcript sequence

TCC ...

Genome browsers

UCSC

Gene

NCBI:22272

Aliases

1100001F06Rik,
1500040F11Rik, 5830407L17Rik, 9.5kDa,
AA959903, c1502, ENSMUSG00000044894,
MGI:107807, NCBI:22272, OFF:Uqcrq,
QP-C, Qpc, Uqcrb,
Uqcrq

Chr 11

ORFs

20 ORFs

MetamORF ORF ID The MetamORF ID of the ORF. This is an unique ID referring to the ORF.	ORF lenght The genomic length of the ORF (in bp). This length is defined as the sum of the lengths of each exon constituting the ORF (thus excluding its eventual introns) and includes both the start and the stop codons.	Nucleic sequence The nucleic sequence of the ORF.	Amino acid sequence The amino acid sequence of the ORF.	Identification The method of identification used to identify the ORF. MetamORF currently integrates data from three main type of identification methods: bioinformatic predictions, ribosome profiling experiments and mass spectrometry experiments (either proteomics or proteogenomics). See the data sources section of the advances documentation for more information about this.	Start codon The start codon sequence of the ORF.	Kozak context The Kozak context computed by our algorithm for the ORF on the transcript. See the Kozak contexts section of the advanced documentation for more details regarding the nomenclature we use.	Exp. count The number of original datasets that identifed the ORF on the transcript.	Data sources The data sources in which the ORF has been identified. Click on the button to display all the original IDs in a pop-up. See the data sources section of the advanced documentation for more details regarding the information related to the data sources and the original ORF IDs.	ORF annotations A comma-separated list of the annotations computed by our algorithm for the ORF on the transcript. See the section dedicated to ORF annotations in the advanced documentation for more details regarding the nomenclature we use.	Cell types A comma-separated list of the cell types in which the ORF has already been identified on the transcript.
91732	87	ATG ...	MSV ...	Ribo-seq	ATG		4	sORFs_org_Mouse	ncRNA sORF	Brain, Liver, Testis
454824	126	CTG ...	LGV ...	Ribo-seq	CTG		15	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, R1E, Spleen_B_cell, v6-5
8543	69	TTG ...	LSS ...	Ribo-seq	TTG	moderate	1	sORFs_org_Mouse	ncRNA sORF	Skin_tumor
20396	231	GTG ...	VIS ...	Ribo-seq	GTG		3	sORFs_org_Mouse	ncRNA sORF	Brain, E14, Testis
19136	216	TTG ...	LSP ...	Ribo-seq	TTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, MEF, Testis
935150	240	ATA ...	IRH ...	Ribo-seq	ATA		2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
18455	150	CTG ...	LGV ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, MEF, R1E, Testis
23258	66	CTG ...	LSQ ...	Ribo-seq	CTG		13	sORFs_org_Mouse	ncRNA sORF	3T3, B_cell, BMDC, Brain, E14, Liver, MEF, Neutrophil, Testis, v6-5
8772	87	GTG ...	VVY ...	Ribo-seq	GTG	strong	7	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, MEF, Skin_tumor, Testis
90999	249	CTG ...	LAR ...	Ribo-seq	CTG		4	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Testis
933177	183	TTG ...	LSS ...	Ribo-seq	TTG		3	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14
20387	75	ATG ...	MAS ...	Ribo-seq	ATG		6	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, Liver, MEF, Testis
8917	78	CTG ...	LIY ...	Ribo-seq	CTG	weak	9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, MEF, Skin_tumor, Testis
935797	228	ATC ...	ISY ...	Ribo-seq	ATC		2	sORFs_org_Mouse	ncRNA sORF	BMDC, MEF
8888	30	TTG ...	LGT ...	Ribo-seq	TTG		12	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, MEF, R1E, Skin_tumor, Testis
933229	138	ACG ...	TCC ...	Ribo-seq	ACG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
419099	78	ACG ...	TRL ...	Ribo-seq	ACG		2	sORFs_org_Mouse	ncRNA sORF	BMDC, E14
17625	90	CTG ...	LSQ ...	Ribo-seq	CTG		9	sORFs_org_Mouse	ncRNA sORF	BMDC, Brain, E14, Liver, MEF, R1E, Testis
930415	135	AGG ...	RPW ...	Ribo-seq	AGG		1	sORFs_org_Mouse	ncRNA sORF	BMDC
419454	39	CTG ...	LEV ...	Ribo-seq	CTG	strong	3	sORFs_org_Mouse	ncRNA sORF	BMDC, E14, Liver

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